Branchiostoma floridae (Florida lancelet): 118418447
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Entry
118418447 CDS
T01074
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118418447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118418447
Enzymes [BR:
bfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118418447
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
118418447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
DUF6781
Lyase_8_C
Motif
Other DBs
NCBI-GeneID:
118418447
NCBI-ProteinID:
XP_035680244
UniProt:
A0A9J7LC98
LinkDB
All DBs
Position
6:complement(9113936..9133345)
Genome browser
AA seq
1750 aa
AA seq
DB search
MLTWEIPSQRLCGVQFSTYSAEEICRLSVKEVTNPQTFDNLLHPTTGGLYDPALGPTDRD
DLCGTCAQNYLHCPGHMGHVNLPLPVFNPLFLRLLYQMLRGSCFYCHRLMCPKIQAQLIT
SQLKALDHGMVQMVEKLHEVLSGILEEEGDADDDYISQQLEEELQKAISGVDTKVTQTQQ
NIKTAVGKRKDLVKEFTKDYFKKRGSKCVHCKSPVRNLKMQHNSRILFKGIPKRHHKRKN
DDGEEEEDEIGEGEDWLADKLDVKNVITDPTVESGYLTPYEARAHLRALWKKEGELLSNL
FGALRLVPQGTCPIDIFFLEVLPVPPSRFRPVSVLGDKRFENAQTSNLAKVLAECVVVRK
LLQEMGKEEAESTKTGKTILDEISGTTVTEKVNNTWLRLQASVNRVVDSDLDKLSNDKSP
GIKQLIEKKDGLFRKHMMGKRVDYAARSVISPDPYINMDEIGIPLVFATKLTYPQPVTTW
NVRELRQAVINGPNVHPGAAFVVNENGHKTVLSVSDPTQREAIAKQLLTPSSYPGAAMGT
KIVHRHIKNGDVLLLNRQPTLHKPSIMAHKARILPGEKTLRLHYANCKTYNADFDGDEMN
AHFPQNELGRAEAYAIASTDQQYLGPKDGKPLSGLIQDHMVSGVTMTLRGRFFAREEYHQ
LVFSALTDKQGHVRLLPPSIVKPRILWSGKQVVSTVLLNIIPEGKAPLNMDSKAKISGKL
WTTAPSRASRSGVRPLRDGEMCESQVIIRQGQLLCGILDKGHYGPTPYGLVHCCSELYGG
KVSSRLLTCLGRLFTTFLQNHLGFTLGVEDILLTQKADVKRREIMTAAAHCGDDAAARAL
GMDISVKIETDTLKEALQTAHFSPDDQDMKEWDMAMKSKTDQFSNDINKACTPNGLLKMF
PHNNLQLMVQSGAKGSSVNCMQISSLLGQIELEGRRPPLMPSGSSLPSFLPYDTSPRAGG
FVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVINYDLTVRD
SDGSLIQFYYGEDGLDIPKTQFLGPKHYPFMVNNHRAVVQQEQLRQVQDRVDTTAAAAWQ
RKVNKWKKKQKKKGLLNSRERRSAFLRYCQEELPSLRQDNPGLDSDTGRLKSALAAVDLW
KDMEEDDREKYRKQSKKCPDPTLAKLRPDRHLGSTSELYSDILNEYVATNPMGLPSEEEV
SDGSDEMTIDRFHAMMQYKYMRSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMN
VTLGIPRLREILMVASANIKTPTMEVPLVDSPEARTAAENIRRRFTQVHLFQVLESVEVS
ETLFVESRLERHRTYTVRFQFLPPDTYEKDVYLSPAKILHFMERKFFRRLLEALKRQAKE
MQEHKLLSSREKRNILDVDDDDGDDDDDGGPDEPVPMTNKKPPTEEDSSEEEDNDGDATA
VKQKQKHSQDQDYDEKGESDPEEEDKEDEDEEEEEDDSGNKLPPKSPSPETGEEEKEEGT
PETPATPADEKKKKKKKKKRKEREAVQDDIRINAVLAMSPQISGYSYDAEDEEWCEIKLQ
LDIVGSKFDMTSLVEREAHKAVVHQTPGITRCFLSDSKLPGEEGVTRLKTEGVKLQELFK
YDRVFDLNKLCSNHIHAMANTYGIEAACRIIVKEIKEVFAVYGIEVDPRHLSLVADYMTY
EGVYKPFNRTGIQSNASPFQQMSFETSMQFLKEATISGAKDDLKSPSARLVTGRPVMGGT
GCFELLQPLV
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgtgggagatcccatcccagcgcctgtgtggggtgcagttcagcacatacagt
gcagaggagatctgcaggctgagtgtgaaggaggtcaccaacccacaaacattcgacaac
ctcctacatcctaccactggggggctgtatgatccagcactcggtccaacagacagagat
gatctgtgtggcacctgtgcccagaactacttacactgtcctggtcacatgggccatgtc
aacctgcccctcccagtcttcaacccactcttcctcagactgctgtatcagatgctgaga
ggttcctgcttctactgccacagactgatgtgtcccaagattcaggctcaactcattact
agtcaactcaaggccttagaccatggcatggttcagatggtggagaagctccatgaggtc
ctgagtggcatcctggaggaggaaggggatgctgatgatgactacatctcccagcagctg
gaggaggagctacagaaagctatcagtggggtggatacaaaagtaacccagacccagcaa
aacataaaaacagctgttgggaagagaaaagatctcgtgaaggaattcacaaaggactac
ttcaagaaaaggggatccaagtgtgtccattgtaaaagcccagtcagaaacctcaagatg
caacacaacagtagaatcctgttcaaggggataccaaagaggcatcataagaggaagaat
gatgatggtgaagaagaggaagatgaaataggagaaggggaagattggttggctgataaa
cttgacgtgaagaacgtcatcacagaccccactgttgaatcaggttacctcactccctat
gaagccagggcacatcttagagctttgtggaaaaaagaaggtgagcttctgtccaacctg
tttggagccctgaggttggtgccccagggaacttgccccattgacatcttcttcttggaa
gttttacctgtaccgccatccaggtttagaccagtttcagttcttggtgacaaaagattt
gagaatgcacagacatcaaacttggccaaagtgctagcagagtgtgttgtagtcagaaaa
ctgctacaggagatggggaaagaggaagcagagagtacaaaaacagggaagaccattcta
gatgaaatatcagggacgacagtaacagagaaggtgaacaacacgtggttgagactgcag
gcatctgtcaacagggtggtggacagtgatctggacaagctgtccaatgacaagagtcct
gggataaaacagctgatagagaagaaagatggtttgttccgcaaacacatgatgggaaag
agagtggactacgctgcccggtccgtcatctcccctgatccgtacatcaacatggatgag
atcggcattcctctggtttttgctaccaagctgacctacccccagcctgtgacaacgtgg
aacgtccgagaactcagacaggcagttatcaacggacccaacgttcatcctggagcggct
tttgttgtaaatgagaatggccataagaccgtcctgagtgtgagtgaccccacccaacga
gaggccatcgccaaacagctcctcacccccagcagctaccccggagctgccatggggacc
aagatagttcatcgtcacatcaagaatggtgatgtcctccttctcaacagacagccaaca
ctacataaacccagtatcatggcacataaggctcgaattttgcctggagaaaagacgctt
agactccactatgccaactgtaagacgtacaatgctgactttgatggagacgagatgaat
gcacacttcccccagaatgagctcgggagggcggaggcctatgccatagctagcacagac
cagcagtacttgggccccaaggatggtaaacccctcagcggcctcatccaggaccacatg
gtgtcgggggtgaccatgactctacgagggcgtttcttcgcgcgggaagagtaccaccag
ctcgtgttcagcgccctgacagacaaacagggccacgtgaggctgctgccgccgagtatc
gtcaaaccgcgtattttgtggagcgggaaacaggtggtatccacggtgctgttgaacatc
attcctgaggggaaagcaccactaaacatggacagtaaagccaagatatctggcaagctg
tggacgacagctccgtccagagctagcagatcaggtgtgcgcccgttacgtgatggtgag
atgtgtgagtcccaggtcattatcagacagggtcagctgctctgtgggatactggacaag
gggcactatgggcccacaccgtatggactggtccactgctgcagcgagctttatggtggg
aaggtgtccagtagactgttgacctgtctgggtcgcctgttcaccaccttcttacaaaac
cacctgggcttcacactgggtgtcgaggacatcttactgacacagaaggccgatgtgaag
cgacgagagatcatgacagcagctgcccactgcggggacgatgcagctgcacgggctcta
ggcatggacatcagcgtaaaaattgaaacagacacactgaaagaagccctgcagactgcc
cacttcagcccagatgaccaggacatgaaggagtgggacatggccatgaagtccaagact
gaccagttcagcaatgacatcaacaaggcctgtacacctaacggtctcctgaagatgttc
cctcacaacaatctccagctcatggtgcagtctggcgctaaaggctcatctgtcaactgt
atgcagatctcttccctgttgggccaaatagagctggagggccgtcgcccccctctcatg
cccagtggtagctccctgccatcattcctgccctatgacacctccccccgcgcaggtggg
tttgtggatggtcgcttcctgactggaatcaggccacaggagtacttcttccattgtatg
gcaggcagagagggtctggttgacacagctgtgaagaccagcaggagtggatatctgcag
aggtgcatcatcaaacatctggaggggctggtcatcaactatgacctcactgtacgtgac
agtgatggcagtttgatccagttctactatggagaggatgggctggacatccccaagact
cagttcctgggtcccaaacactaccccttcatggtcaacaaccaccgggctgtggtacag
caggaacagctgcggcaggtgcaggacagggtggacactacagctgcagctgcatggcag
agaaaggtcaacaagtggaaaaagaagcagaaaaagaaaggtctgctgaactcccgagag
aggaggtcggccttcctgcgttactgtcaggaggagctgcccagtctgagacaggataac
ccaggactggactctgacacaggcaggctcaagtcagccctggctgctgtggatctgtgg
aaggacatggaagaagatgacagggaaaagtacagaaagcaaagcaaaaagtgccctgat
cccacgttagcaaagcttcgtccggaccgccaccttggttccacgtccgagctgtactca
gacatactgaatgagtatgtggcaaccaaccccatgggactccccagcgaggaagaggta
tcagatggttctgatgagatgaccatcgaccgtttccacgccatgatgcagtacaagtac
atgaggtcactggtggagccgggagaggctgtgggactgttagctgctcagtccatcgga
gagccatccacacagatgaccttgaacaccttccattttgccggcaggggagagatgaac
gtcacgctgggaatccccaggctcagagagatcctgatggttgccagtgccaacatcaag
acccccacgatggaggtgccacttgtagactcacctgaggccaggacggcagctgagaac
atccgccgcaggttcactcaggtgcatctgtttcaagtccttgagtcggtggaagtctct
gagactctgtttgtggagagcagacttgagaggcacagaacatacacagtacggttccag
ttcctccctcccgacacgtacgagaaggacgtgtacctgagtcccgccaagatcctgcac
ttcatggagaggaagttcttccgcaggcttctggaggctctgaagagacaggccaaggag
atgcaggaacacaaactgctaagctcacgagaaaaacggaacatcttggatgttgatgat
gacgatggtgacgatgatgatgatggaggaccagacgagccggttccaatgaccaataag
aaacctcctacagaggaggacagctctgaggaggaggacaatgatggggatgccacagct
gtgaaacagaagcagaagcactctcaggaccaggactatgatgagaaaggagagtctgac
ccagaagaagaggacaaggaagatgaggatgaagaggaggaggaggatgacagcgggaac
aagcttcctcctaaaagccccagtccagaaacaggagaagaagagaaggaagaaggaaca
ccagaaacacctgctactccagctgatgagaagaagaagaagaaaaagaagaagaaacgg
aaggagagagaagctgttcaggatgacatcagaatcaacgctgtgctggcaatgagccca
cagatttctgggtacagttatgatgcagaagatgaggagtggtgtgagatcaaattacag
ctggacattgttggcagcaagtttgacatgacgtccctggtggagagggaagctcacaag
gccgtggttcatcaaacacccgggatcacccgctgtttcctgtcagacagcaagctgcca
ggggaggagggggtcaccagactcaaaactgaaggggtcaagttacaggagctattcaag
tacgacagagtgtttgacctgaacaaactttgctccaatcacatccatgccatggccaac
acctacggtatagaggctgcctgtcggattatagtcaaggagatcaaagaagtgtttgca
gtgtacgggattgaggtggaccctcgtcacctgtcgctggtagcagactacatgacatat
gaaggagtgtacaagcctttcaacagaacaggcatccagtccaacgcctcacccttccaa
cagatgagctttgagacatccatgcaattcttaaaggaagcaaccattagtggtgctaaa
gatgatttaaagtccccttcagcaagactcgttactgggaggccagtcatgggaggaact
ggctgctttgaactcctgcagcctttagtttag
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integrated database retrieval system
