Branchiostoma floridae (Florida lancelet): 118420742
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Entry
118420742 CDS
T01074
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03022
Basal transcription factors
bfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118420742
09124 Replication and repair
03420 Nucleotide excision repair
118420742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118420742
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118420742
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118420742
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118420742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
118420742
NCBI-ProteinID:
XP_035683594
UniProt:
C3YTK8
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All DBs
Position
8:19855811..19864860
Genome browser
AA seq
457 aa
AA seq
DB search
MAAAGTKKLDCKDLHGYLKTLGSSLLDELYGRPATCLAVFRELTDLAKHYVMRLLFLEQA
VPQAVVGSWVTSGNHSEHLRAVSQLSELRVWHEHQISGGLAGWILSPTFRANLRTALLGG
GKPWFSVVQLPPDKHAKDVAALDTYSLERWEVLLNFIVGSGEAQVSKDIMEILIKSGLMK
SEEGSLHPTITPAGFQFLLMDTPSQVWYIILQYLDTMQSRGLNLVEALQFLFQISFSTLG
KDYPTEGMSDSMQQFLQHLRELGLVNQRKRKSGRFYPTRLAIHLASGISDVEKDFHKEGY
LVVESNYRIYAYTDSELQVALIGLFSEILYRFPNMVVANLTRDSVQEAVVRGITADQILH
FLRVNAHPKALHRVPIVPPTISDQIRLWEMERDRLTFTEGVLYNQFLSQPDFEMLRNYAK
DLGVLLWENNPKRLMVVSKAGHDDVKRYWKTIRKGNS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggggacgaaaaaattggattgtaaagatttgcacggttatttgaagact
ttggggtcgtctctgttagatgaattgtacgggagacctgcaacatgtctggcggtcttc
agggagctgacggaccttgcgaagcactacgtgatgcggctgctgttcctggagcaggca
gtcccacaggccgtggtggggtcatgggtcaccagcggaaaccacagtgagcacctgaga
gctgtgtcccagctatcagagctgcgagtgtggcatgaacaccagatctctggcggcttg
gcgggttggatcctcagtcccaccttcagggcaaacctcaggactgcactgctgggagga
ggcaagccctggttcagtgtcgtgcagctgcctcctgacaaacatgccaaagatgtggct
gcactggatacatactcactggagagatgggaggtcctgctgaatttcatcgtggggtca
ggagaggctcaagtcagtaaagacatcatggagatcctcatcaagtctgggctcatgaag
agtgaggagggcagtctccaccccaccatcacccctgcagggttccagttcctcctgatg
gacacgccctcacaggtgtggtacatcatcctgcagtacctggacaccatgcagagtcga
ggactgaacctggtagaggccttacagtttctttttcaaataagcttttccacgctcggt
aaggactacccgacagagggtatgagtgactccatgcagcagttccttcagcacctgcgt
gagttggggctagtgaaccagcgcaaacggaagtctggaaggttctacccaacaagactc
gccatccaccttgcctcaggtatttcagatgtggagaaagacttccacaaagaggggtac
cttgttgttgagagtaactacagaatatatgcatacacagactcagagctgcaggtggcc
ctgattgggcttttcagtgaaattttgtacagatttcccaacatggtagttgctaacctg
accagagacagtgtacaggaagcagtggtgaggggcatcacggctgatcagattctccac
tttctgcgagtgaatgcacatccaaaggctctccacagagttcccatagttcctcccacg
atcagtgatcagatcaggctatgggagatggaacgggacaggctcactttcactgaaggt
gttttatacaaccagttcctgtcacaacctgactttgagatgctcaggaattatgcaaag
gacttaggagtcttactatgggagaacaaccccaagcgactgatggtggtcagcaaagct
ggacatgacgatgtcaagagatactggaaaaccattcggaaagggaacagctga
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