Branchiostoma floridae (Florida lancelet): 118430593
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Entry
118430593 CDS
T01074
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03022
Basal transcription factors
bfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118430593
09124 Replication and repair
03420 Nucleotide excision repair
118430593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118430593
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118430593
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118430593
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118430593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Motif
Other DBs
NCBI-GeneID:
118430593
NCBI-ProteinID:
XP_035697454
UniProt:
C3YN18
LinkDB
All DBs
Position
14:15709363..15732270
Genome browser
AA seq
396 aa
AA seq
DB search
MADEDVEKTYRWEGDYEKTWEVLQEDAAGSLQASVDDIIHRAKRRRLQDRQVNVRLGMMR
HLFVVVDMSQSMEDQDLKPTRILVTLKLLENFIEEYFDQNPISQLGVITTKNKRAEKLTE
LGGNPKRHVTQLRTLSSASCVGEPSIMNSLDLAAQTLKHMPTHTSREVLIIMGSLTTCDP
GDINITMKMVKDLNIRCSVIGLAAEVQVCKKLCNMTNGTYGIILEDTHFKDLLLEHCTPP
PATVNTDSSLIKMGFPQHTISQDHDSVKPSMCMCHQDTEAQSFTPSGYFCPQCHAKYCEL
PVECKICGLTLVSAPHLARSYHHFFPLENFREIPLEELDAELSRFCTGCQVQLNGPVVYC
CTRCSRPFCIDCDLFIHETLHSCPGCINKRIGPNSS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagatgtcgagaaaacgtaccggtgggaaggagattatgagaaaacttgg
gaggtactgcaggaggatgcagcaggctcgctccaggccagtgtggatgacatcatccat
agggccaagaggaggagattacaggatagacaagtcaatgttcgactggggatgatgcga
cacctgtttgtagtagtagacatgtcacagtctatggaagaccaagacctcaaaccaaca
agaatcctggttaccctcaagttactggagaatttcatagaagaatattttgatcagaat
ccaattagccagcttggtgtcatcacaactaagaacaagagggcagagaagctgacggag
ctgggaggtaaccccaaacgacacgtcacccagctgaggactctaagcagtgcttcttgt
gtcggggaaccctccatcatgaactcactggaccttgcagcacagacactcaaacacatg
ccgacccacaccagtagagaagtactgatcatcatgggaagtctcaccacatgtgatcct
ggggacatcaacatcaccatgaagatggtaaaagacttgaacatcaggtgttcagtgatt
ggcctggcagctgaggttcaagtgtgcaagaaactgtgcaatatgacaaatggaacctat
ggcattattttagaagatacacactttaaagacttgttgttggaacactgcacccctccc
cctgctactgtaaacactgattcttctctgataaaaatgggtttccctcagcatactata
agtcaagaccatgatagtgtcaaaccttccatgtgtatgtgccaccaagatacagaggcc
cagtccttcactccatcaggatatttctgtccacagtgccatgcaaagtattgtgagcta
cctgtggaatgtaaaatttgtgggttgacactagtatcggcgccgcaccttgcacgctcc
tatcatcacttcttcccactggaaaacttccgagaaatccctctagaagaacttgatgca
gaactttccagattttgtacagggtgccaggtacagctgaatggacctgtggtgtactgt
tgtaccaggtgctcacgacccttctgtatcgactgtgacctcttcatccacgaaactctc
cactcctgtcctggctgtatcaacaagaggatagggcccaactcatcatag
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