Brevundimonas fontaquae: JX001_10495
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Entry
JX001_10495 CDS
T09174
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bfq
Brevundimonas fontaquae
Brite
KEGG Orthology (KO) [BR:
bfq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfq03019
]
JX001_10495 (hrpB)
Enzymes [BR:
bfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JX001_10495 (hrpB)
Messenger RNA biogenesis [BR:
bfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JX001_10495 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
HA2_N
Motif
Other DBs
NCBI-ProteinID:
QSF53239
LinkDB
All DBs
Position
complement(2137919..2140345)
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AA seq
808 aa
AA seq
DB search
MLPIHAVLEPLKAALSAGNKAVLAAPPGAGKTTVVPLALLDQPWLDGKVLVLEPRRLAAR
AAADRMAATLGEQPGGTVGYRTRLQSRIGPNTRIEVITEGVFTRMILDDPGLEGVGAVLF
DEFHERSLDADLGLALARDTQGLLREDLRLLVMSATLDVVGVSHLLDGAPVIEAEGRVWP
IKTRYLGRNPSERFEEAVARACLTALGEETGSVLVFLPGQGEIHRVARLVNERLRLPNID
VVPLYGGLDRAEQDRAIEPAALGRRKLVLATSVAETSLTIEGVRVVIDGGLSRVPRFEPS
SSLTRLATVKVSRSSAEQRRGRAGRTEPGVCYRLWDEEQTRGLIPHQRPEIQEADLTGLA
LDLARWGARSAEELALLDPPPAGALAEARKVLTRLGALDADGGLSKHGLRLTKIPLSPRL
AHMVAVASDAGNAMTGARIAAVLSEPGLGGSSIDLADRLIGLERDRTQRARDSIKLAERW
ARAAGGGSGRTIDPGLLLAEAFPERIAKARGKAGEFLLASGRGAVLEATDHLAREPWLAI
AELGGGDTRDRVRLAAALEADQIDSDLARLISTEDRLAREPSGRSVIRRSRRIGAIVLDE
KIVGAPDAKTLTAALRAEIEADGLGALKWGEQASGLRARLAFLQARDPAWPDVSDEALLA
AREDWLWPLLDGAKSLEGIVDGHLAEALRGLIPWDLQRRLDELAPARLVTPLGSAAIDYA
AEGGPRVDIRVQELFGVTTHPTVGGVPLTLALLSPARRPVQVTKDLPRFWSGSWAAVRAE
MRGRYPRHPWPENPAEAQATNRVKPRGA
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctatccacgccgttcttgaaccgctgaaagccgctctgagcgcgggcaataag
gccgtgctggcggcgccgccgggggcgggcaagacgacggtcgtgccgctggccttactg
gatcagccctggctggacggcaaggtgctggtgctggagccgcgacgcctggccgcacgg
gcggcggccgaccggatggctgcgaccctgggcgaacagccgggcgggacggttggctat
cgcacccgcctccagagccgcatcgggccgaacacgcggatcgaggtgatcaccgagggc
gtcttcacgcgcatgattctggacgatccgggtctggagggcgtgggcgcggtgttgttc
gacgagttccacgaacgcagcctggacgccgatctcgggctggctttggcgagagacacg
caagggctgctgcgcgaggatctgcggctgctggtcatgtccgcgacgctggatgtcgtc
ggggtctcgcacctgctcgacggcgcgccggtgatcgaggccgagggaagggtctggccg
atcaagacccggtatctgggccgcaatccgtccgaacggttcgaagaggctgttgcgcgc
gcctgcctgacagcgctgggcgaggagacggggtcggtgctggtcttcctgccagggcag
ggcgaaatccatcgggtcgctcggctggtgaacgagcggctgcggctaccgaacatcgat
gtcgtgcccctgtatggcgggctggaccgggccgaacaggaccgagccatcgaaccggcg
gctttggggcggcgcaagctggtgctggcgacatcggtcgcggaaactagcctgaccatc
gaaggcgtacgggtggtgatcgacgggggcctgtcgcgcgtgccacggttcgaaccgtcc
agcagcctgacccggctggcgacggtcaaggtcagccgatcctccgcggaacagaggcgc
ggccgggccgggcgcaccgagccgggtgtctgctaccgcctgtgggatgaggaacagacg
cgcgggctgatcccgcatcagcggccggaaatccaggaggcggacctgaccgggctggcc
ctggacctggcccggtggggcgcacgctcggcggaggagcttgccctgctcgacccgccg
ccggctggagccttggccgaggcgcgcaaggtgctgacacggttgggggcgctggatgcc
gatggcggactgtcgaaacacgggctgcgcctgacgaagatcccgctgtcgccgcggctg
gcccacatggtggctgtggcgtccgacgccggcaacgcgatgacgggcgcacggatcgcg
gcggtgctgagcgagccgggtttgggcggatcgagcattgacctggcggatcgcctgatc
gggctggagcgcgatcggacgcagagagcgcgcgattcgatcaaactggcggagcgctgg
gcgcgcgccgcgggcggcggatcgggacggacgatcgatcctggactgctgttggccgag
gcctttcccgagcggatcgcaaaggcgcggggcaaggcgggtgaattccttttggctagt
gggcgaggggccgtgctggaggcgaccgaccatctggcgcgtgagccttggttggcgatc
gccgaactcggcggcggcgacacgcgcgaccgggtgagactggcggcggcgctggaggcg
gaccagatcgacagcgatctggcgcgcctgatctcgacggaggaccggctggcgcgcgaa
ccgtcggggcggtcggtgatccggcgctcgcggcgcatcggggccatcgtgctggacgaa
aagatcgtcggcgcgccggatgcgaagaccttgaccgccgcccttcgggccgagatcgag
gcggatgggctgggcgcgctgaaatggggcgagcaggcgtcgggactgcgcgcacgtctg
gccttcctgcaagcgcgcgatccagcctggcccgatgtgtccgacgaggctctgctggcg
gcgcgtgaggactggctatggcccctgctggatggggcgaaatcgctggaggggatagtc
gacggccatctggctgaggccctgcgcggacttatcccttgggacctacagcgccgtctg
gacgagttggcgcccgcgcgtctggtcacgcccctgggatcggcggccatcgactatgcc
gccgagggcgggccgcgcgtggatattcgggtgcaggaactgttcggcgtgacgacgcat
ccgaccgtcggcggcgtgccgttgactctcgccctgttgtcgccggcgcgacgtccggtg
caagtcaccaaggacttgccacgcttctggtcgggctcgtgggcggcggtgcgtgcggag
atgcgcggccgctatccccgtcatccgtggccagaaaacccagccgaggcgcaagcgacg
aaccgggtcaagccgcgcggcgcctga
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