Botrytis cinerea (Gray mold): BCIN_08g02540
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Entry
BCIN_08g02540 CDS
T01072
Symbol
Bcdnl4
Name
(RefSeq) Bcdnl4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bfu
Botrytis cinerea (Gray mold)
Pathway
bfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BCIN_08g02540 (Bcdnl4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfu03400
]
BCIN_08g02540 (Bcdnl4)
Enzymes [BR:
bfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BCIN_08g02540 (Bcdnl4)
DNA repair and recombination proteins [BR:
bfu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
BCIN_08g02540 (Bcdnl4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT_2
BRCT
SWIRM-assoc_2
Motif
Other DBs
NCBI-GeneID:
5432470
NCBI-ProteinID:
XP_024550292
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All DBs
Position
8:complement(join(968525..969828,969883..970837,970887..971538,971595..971704))
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AA seq
1006 aa
AA seq
DB search
MSSSQQNRNKRPDAEAIADDERQYAHSAISKEELNDKYPNRPHNHGKTLPFHELFQSLFD
PLEANKNKKPGPATARKKSGPHGPNNLSPNEIRRNIIIRFMSRWRDQVGDDFFPALRLII
PEKDRDRVMYGLKEASVAKLIIKLLNLSKDSDDGYNLMNWKLPARGPPSANSGDFPGRCY
EVLSKRPMRQKVGNMTIGEVNEMLDKLASAQKEDIQLPIFREFYQRMNPTELVWLIRMIL
RQMKIGASEKTFLNLWHPDGEALFNVSSSLRRVCWELTDPDVTLEADETGVELGSCFQPQ
LAQFMAPSFDKMVEKMCPQDTKGKSKEVEFWIEEKLDGERIQMHMEENDDMPGGRRFTWW
SRKGKDYTYLYGNNFEDDNAALTRHMKKAFDPRVTSIILDGEMITWDPITNKIVAFGTLK
TAAISGGKDPFSATATRPVFKVFDCLFLNGDNITKHTLRDRRNALEAAVHNVEGRIEKHD
FKPAKSASEIDPALRKIVAEGSEGLVLKNPQSMYRLNSRNDDWMKVKPEYMTGFGESLDC
IIIGGYYGSGHRGGNLSSFLCGLRVDEKQIKTGANPMKCFSFFKVGGGFNTDDYATIRHQ
TDGKWHKWDIKSPPTEFIELAGSHQERERPDVWIKADESIVVEVKAASVGISDSFRTNYT
LRFPRFKRLRPDKDWKSALSIEEFMELKAKVEEGKEDEFRVDKKKRGSKRVKRERIIAGT
EDVGKTEYAGPNTDVFKGLNFCVLSEMIHPSKKSKVEVEKLIKENGGSIYQSPASKEDII
VIADKRVVKVAALMNAKKTSIVKPQWVIHAIAQRESDAAQGRTSRFIIPFEMIHMLYCRE
EDTEEIEANSDEHGDPYCRDVGPLEYKGIIESMARVEGKTLTKYLQDMLVKQGVDMTEFK
GSMFWGCKAIFVVGELMTFDMDLNVRIEFEHFRIASGKIVEEENIDIERKVREEGVTHIF
FADDKQERLREIKKELGACSPYLLSWRWIRDSWKNEKKVDEAPYLV
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgagtcaacagaatagaaacaaaaggcctgacgctgaggctatagccgacgat
gaacgtcaatatgctcatagcgccattagtaaagaggagcttaacgacaaatatccaaat
cgtcctcataatcatggaaaaacattaccatttcatgagttattccaatcactcttcgat
cctcttgaggccaacaagaataaaaagccaggtccagccactgcacgcaaaaaatcagga
ccacatggacctaataacctttctcctaatgaaatacgaaggaacatcatcattcgattt
atgtcgcgatggcgcgaccaagttggcgatgatttcttccctgctttacgcttgattatc
ccggaaaaagatcgcgatagagttatgtacgggctcaaagaagcttcggttgcaaaactc
attatcaagcttttaaatttatctaaggattcagatgatgggtataatcttatgaattgg
aagcttccggcgcgaggtcccccgagtgctaattcgggggattttccgggtagatgttat
gaggttttatcgaaaagaccaatgcgacagaaggttggaaatatgactatcggggaagtt
aatgagatgcttgataaacttgcttcggcgcaaaaagaagatattcagttgcccattttt
cgagaattttatcagcggatgaatccgactgaattggtctggttaattcgaatgattctt
cgacagatgaaaatcggggcttcggaaaagacgtttcttaatctttggcatccagatgga
gaagcgctttttaatgtctcttctagtctccgtagagtttgttgggaactcacagatccc
gatgtcaccttggaagctgatgagacaggcgtggaattgggatcatgttttcaacctcaa
cttgcacaatttatggcaccttcatttgataaaatggtggaaaaaatgtgccctcaagat
accaagggtaaaagtaaagaggtcgaattttggatcgaagagaaattagacggcgaaaga
atccaaatgcacatggaagaaaatgatgatatgccagggggtcgccgattcacatggtgg
tctcgaaaaggcaaagattatacatatctctatggaaataatttcgaagatgacaatgcg
gcactgacaagacatatgaaaaaggcttttgatccaagagtaactagtattatattggat
ggcgaaatgatcacctgggaccccattacgaacaagatagtggcatttggcactctgaag
acagccgcaatatcaggaggtaaagatccattctcggctacagctactagaccagtattc
aaggtcttcgactgcttatttttgaatggtgataatatcacaaaacatactttgagggat
aggcgaaacgcattggaggcagcggtccataatgttgagggtcgaatcgaaaaacacgat
tttaaacctgctaaatcggcttctgaaatcgatcctgctttgcggaaaatcgtggctgag
ggctctgaaggactggtgttgaagaatccacaatcaatgtatagacttaacagtcgtaat
gacgattggatgaaggttaaacctgaatacatgactggatttggagaatctttggattgc
ataatcattggtggatattatggatcaggtcatcgtggaggaaatttatcatcattcttg
tgcggtctacgtgttgatgagaaacaaatcaaaactggagcaaaccccatgaaatgtttc
tccttcttcaaagtaggcggtgggtttaatacagatgactatgctactatccgtcatcaa
accgatggaaaatggcataaatgggacatcaaatccccacctacagaattcatagaatta
gccggctctcatcaagaaagagaacgaccagatgtctggatcaaagccgacgagtcaatc
gttgttgaagtcaaagctgcatcagtaggcatatccgactctttccgcacaaattacaca
ttacgatttccacgtttcaaacgtttacgtccggacaaagattggaagagtgcactttca
attgaagaatttatggaattaaaagccaaagttgaggagggaaaagaagacgaattcaga
gtggataagaagaaaagaggttcgaagcgagtcaagagagaacgcattatcgcgggcaca
gaagatgttgggaaaacagaatatgcaggaccaaacacggatgtattcaagggactcaac
ttctgcgttttaagcgagatgattcatccttccaagaaatccaaggttgaagtcgaaaaa
ctcatcaaggaaaatggaggaagtatctatcaatctccagcttccaaagaagatataatc
gtcatagccgataaacgcgtggttaaagtcgccgctctcatgaacgccaagaagactagt
atcgttaaaccgcaatgggtaatacacgccattgcgcaaagggaatcagatgctgcacag
gggagaacatctagattcatcattccgttcgagatgatccatatgctatattgcagggaa
gaagacactgaagagatcgaagcaaactcggatgaacatggtgatccatattgccgggac
gtgggaccgctggaatacaaaggaattatagagagcatggctcgagttgaaggcaaaacc
ctgacgaaatatctacaagatatgctggtgaagcaaggcgtggatatgacggaatttaaa
gggagcatgttttggggctgcaaggcaatttttgtggtgggggaattaatgacgtttgac
atggatctcaatgtgcggatcgaatttgaacatttcaggattgccagtgggaagattgtg
gaggaagaaaatatcgatattgaaagaaaagttagggaggagggcgttacgcatattttc
ttcgcggacgataaacaggagagactgagggaaatcaaaaaggaactcggcgcatgctca
ccgtatcttttgagctggagatggatccgcgattcctggaaaaacgagaagaaagtggat
gaagctccgtatttggtttaa
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