Botrytis cinerea (Gray mold): BCIN_13g00240
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Entry
BCIN_13g00240 CDS
T01072
Symbol
Bccdc9
Name
(RefSeq) Bccdc9
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bfu
Botrytis cinerea (Gray mold)
Pathway
bfu03030
DNA replication
bfu03410
Base excision repair
bfu03420
Nucleotide excision repair
bfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BCIN_13g00240 (Bccdc9)
03410 Base excision repair
BCIN_13g00240 (Bccdc9)
03420 Nucleotide excision repair
BCIN_13g00240 (Bccdc9)
03430 Mismatch repair
BCIN_13g00240 (Bccdc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfu03032
]
BCIN_13g00240 (Bccdc9)
03400 DNA repair and recombination proteins [BR:
bfu03400
]
BCIN_13g00240 (Bccdc9)
Enzymes [BR:
bfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BCIN_13g00240 (Bccdc9)
6.5.1.6 DNA ligase (ATP or NAD+)
BCIN_13g00240 (Bccdc9)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
BCIN_13g00240 (Bccdc9)
DNA replication proteins [BR:
bfu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
BCIN_13g00240 (Bccdc9)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
BCIN_13g00240 (Bccdc9)
DNA repair and recombination proteins [BR:
bfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
BCIN_13g00240 (Bccdc9)
NER (nucleotide excision repair)
Other NER factors
BCIN_13g00240 (Bccdc9)
MMR (mismatch excision repair)
Other MMR factors
BCIN_13g00240 (Bccdc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
5427989
NCBI-ProteinID:
XP_024552416
LinkDB
All DBs
Position
13:join(126274..126299,126385..126626,126687..127884,127932..128700,128754..129290)
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AA seq
923 aa
AA seq
DB search
MPPKQATLGKFFGQPKGAPAKQSKLSFSSKPSSSKPPASSPSASEASEENKDVEMKDGDS
DIGNEDSIKKEDGSDKKQKVKKENAKLEKGVKRSRSASPKLSAKTKAIKIEDEVKEEEEE
EDEDEEPIVKKPRRAGKAETREKKPSPKPVSMKTQTKPEPESSTKKATSKNMSPPPKRGK
NAKVVEEDEEDEDEVQATAPSKPAKRRDSNVSKSASESEIEEDLESSGDEKPEVAAKARE
KIQTSLKSKSKDPYPDWKPGEPVPYAALCTTFSLVEMTTKRLVIAAHCSLFLRQVLRLTP
DDLLPTVLLMINKLAADYAGIELGIGESLIMKAIGESTGRNLSVIKNDQKEIGDLGLVAV
KSRSNQPVMFKPKPLTIRGVLKSLIDIATMQGNGAQGRKVDGIKKLLSAADAHSSGKVDI
TKDKGGASEAKYIVRFLEGKLRLGLAEKTVLVSLAQAMVCHEIEAKGSGKVPSTEQMAKG
ESILKAVHSSLPSYDVIIPAMLEHGIFNLKDNCKLQPGVPLKPMLAKPTKAITEVLDRFE
NQTFTCEYKYDGERAQIHYVSKDSSKQYLGATPAAAKSSDGGLAAIFSRNSEDLSKKYPD
ILGKLNTWVKEDTKSFVLDCETVAWDTVEKKVLPFQQLMTRKKKDVKVEDVKVKVCVFAF
DLLFLNGEAVVEKSLRERRALLHEAFQPVEGEFQFATSMNGQEIDEIQTFLDDSVKASCE
GLMVKMLDGTESGYEPSKRSRNWLKIKKDYLSGIGDSLDLVVLGAYYGRGKRTSVYGAFL
LACHNPQTDTYETICNIGTGFSEQVLEELYAQLSAIVIDRPKPFYSHSSGNQHQPDVWFE
PRYVWEVKTADLTLSPRYKAGCKEGVDKGGERGISLRFPRFIKIRDDKKPDMATSSRQVA
EMYRKQESVTKNKGPSVDDDFEY
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaaagcaggcgacattgggcaagttcttcggccaaccaaaaggtgcgcctgca
aaacaatcgaagctatctttctcttccaagccaagctcaagcaagccgccagcaagctcg
ccatccgcgtcagaagcctcagaagagaataaagatgttgagatgaaagatggagattca
gatataggaaacgaagattcgatcaagaaagaagatgggtctgataaaaagcaaaaagta
aaaaaagaaaatgcaaagttagagaaaggtgtgaagagatcaagatccgcgagtccgaaa
ctctcagcaaagactaaggctataaaaattgaggatgaagtcaaggaagaagaggaggag
gaggatgaagacgaagagcctattgtgaagaagcctcgaagagctggaaaggccgaaaca
agagagaagaagccttcgccaaaacccgttagcatgaaaactcagaccaaacccgagcca
gaatcatcgaccaaaaaagccacttcaaagaacatgtcaccgccaccaaagcgtggtaag
aacgccaaggtagtagaggaagatgaagaggatgaagacgaagtgcaagcaacagcacca
tcaaaaccggcaaagcgcagagactcaaatgtatccaaatcggcatcagaatccgaaatc
gaggaggatttagaatctagtggagacgagaaaccggaagtagctgccaaagctagggag
aagattcaaacatccttgaaatcgaagagcaaagacccatatccggattggaaaccagga
gagccagtaccttatgcagctctttgtacaacattctccctggtagaaatgacgaccaag
cgattagtaattgcggctcattgttccttgtttcttcgtcaagtccttcgacttacccca
gatgatcttttacctacagttcttctcatgatcaacaagttggctgcagattatgctgga
attgagttgggtattggtgaatcattaattatgaaggccatcggagagtctactggtcga
aatttaagcgtcatcaagaatgatcagaaagagattggtgatcttggacttgtagctgtt
aagagtcgatcaaatcagcctgtaatgttcaagccaaagccattgacaatcagaggcgtt
ctgaagagtctgatcgacattgctacaatgcaaggcaacggtgcccagggacgaaaagtt
gatgggatcaagaagttgctttccgcagctgatgcgcattcgtcaggtaaagttgacatc
acaaaagacaagggtggagcaagcgaagcaaaatacattgttcgtttcctagagggtaag
cttcgtcttgggttggcagaaaagaccgttctcgtgtctttggctcaagcaatggtatgt
catgagattgaagcgaaaggttctggaaaggttccaagcacagaacagatggcgaaggga
gagtcgatattgaaagcagttcacagctcccttcctagttatgatgtgatcattccagca
atgttggagcacggcatcttcaacctgaaagataactgcaagctccagcccggtgtacca
ttgaagcctatgttggccaaaccaacaaaagcaataacagaagtcctggatcgatttgaa
aatcaaactttcacttgcgagtataaatacgatggagaaagagcccagatacattacgtt
tctaaggattcttccaaacaatatcttggtgctacacccgctgctgctaaatcgtctgat
ggaggccttgctgctatattctcacgaaactcagaagatctttccaagaaatacccagat
attcttggcaaactaaacacatgggtcaaggaagatacgaagagctttgtactcgattgt
gaaacggttgcttgggatacggttgaaaagaaagtcttgcctttccaacaactcatgaca
cgaaagaagaaggatgttaaggttgaagatgttaaagttaaagtttgtgtgttcgccttc
gatttactttttctgaacggtgaagctgttgttgagaaatcattacgagaacgtcgtgca
cttctccatgaagcttttcagcctgtcgaaggcgaatttcaatttgctactagtatgaat
ggccaagagattgatgagattcagacattcttagatgatagtgtcaaggcatcgtgcgaa
gggttgatggtgaagatgttggatggcacggaaagtggttacgagcccagtaaaagaagt
aggaattggcttaagatcaagaaggattatctctcaggcatcggcgattctctcgatctc
gttgttctaggagcctactatggtcgtggaaagcgtacttccgtctacggagctttcctc
ctcgcctgtcacaaccctcaaactgacacctacgaaactatctgcaacattggcactggt
tttagcgaacaagttctcgaagaactctacgcccaactctctgctatagttattgaccgt
cccaaaccgttctactcccattcctcaggaaatcaacatcaacctgatgtttggtttgag
ccaagatatgtctgggaagtcaagacggctgatttgactttgagtccgagatacaaggcg
ggttgtaaggagggcgtcgacaaagggggagaaaggggcatttcgttaagattcccaaga
tttatcaagattagagatgataagaaaccggatatggcgacgagtagcagacaggttgcg
gagatgtacaggaagcaggagagtgttacgaagaataagggcccgagtgttgatgatgat
tttgagtattag
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