Bufo gargarizans (Asiatic toad): 122919681
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Entry
122919681 CDS
T07965
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03013
Nucleocytoplasmic transport
bgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122919681 (UPF1)
03015 mRNA surveillance pathway
122919681 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122919681 (UPF1)
Enzymes [BR:
bgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122919681 (UPF1)
5.6.2.5 RNA 5'-3' helicase
122919681 (UPF1)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122919681 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122919681 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122919681
NCBI-ProteinID:
XP_044124786
EnsemblRapid:
ENSBGGG00000008201
LinkDB
All DBs
Position
1:complement(353082467..353186409)
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQGQTQSQLDGQVNGPD
GILQNGTVDDGVGKTNQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGARFMTTAMYDAREAIIPGSVYDRSSQARPSNMYFQTHDQIGMISSGPSHVTAMNI
PIPFNLVMPPMPPPSYFGQANGPTAAHSYIDRISQGRGMTKGKSPRGGRQKQRGIGLQGM
SQGNMPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQ
IDVALSQDSTYQGERAYQLGGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcaccttcctggacacggaggag
gccgagcttctgggggccgacactcagggctcggagttcgagttcaccgacttcactctg
cccagccagactcaggggcagactcaaagccagcttgacgggcaggttaatggcccagat
ggtatactacagaatggcacagtggatgatggcgttgggaaaacaaatcagctgctgggt
gagctgaactttgaggaagatgaagaagacacatattatacaaaggatcttccggtgcat
gcctgcagctattgtggcattcatgatccagcttgtgtggtctactgcaacacaagtaaa
aaatggttctgcaatggacgtggtaacacctctggcagccacattgtgaatcatttggta
agagcaaagtgtaaagaggtcactctgcacaaggatggaccacttggcgagactgtgttg
gaatgctacaattgcggatgccgaaatgtgtttctcctgggattcattccagctaaggca
gattctgtcgttgtgctcctgtgcaggcaaccatgtgcaagtcagagcagtttgaaggac
attaactgggacagttcccagtggcaacctcttattcaggaccgttgcttcctctcctgg
ttggtgaagatcccttctgaacaagagcagctcagagctcgccaaatcactgctcagcaa
ataaacaaactggaagagttatggaaggaaaacccttctgccacattggaggatctggaa
aagcctggtgttgatgaggaacctcaacatgttctgcttcgttatgaagatgcctatcag
taccaaaacatatttgggcctcttgttaaacttgaagcagactatgacaaaaaactgaaa
gaatctcagacacaagataacataacggtgcgatgggaccttggcctcaacaagaagagg
attgcttacttcactttgcccaaaactgattctgatatgcgtttaatgcaaggagatgaa
atatgcttgagatacaaaggtgaccttgcacctttgtggaaaggaattggacacgtgatt
aaggtccctgacaactatggtgatgaaattgccatagagctgagaagcagcgtcggtgct
ccggtggaagttactcataatttccaagtggattttgtatggaagtcaacatcatttgat
cggatgcagagtgcgttgaaaacctttgcagtagatgagacttcagtttctggttacatt
tatcacaaacttctgggtcatgaggtggaagatgtcattataaaatgtcagcttcccaag
aggttcactgcacagggacttccagatctcaaccattcacaggtttacgcagtgaagacc
gttctacaacgacctctaagtctcattcaggggccgcctgggactggaaaaactgtaact
tctgcaacaattgtgtatcatcttgctagacaaggaaatggcccggtcttggtgtgtgct
ccaagcaatattgccgtagatcaactcactgagaaaatacaccaaacgggactcaaagtg
gttcgtctctgtgcgaagagccgtgaagccattgattctccagtttctttcttggcactg
cacaatcagattcgcaacatggaaagtatgccagaacttcagaaattgcagcaattgaaa
gatgagacaggagaactgtcatcggctgatgagaaacgatacagagctcttaaaaggaca
gcagaacgagaattacttatgaacgcggatgtaatttgctgtacatgtgttggtgcagga
gatcctaggcttgctaaaatgcaattccggtcaattttgattgatgaaagtactcaagcc
acagagcctgaatgtatggtgccagttgtgctgggagccaaacagctaatacttgtagga
gatcactgtcagcttggtccagttgtgatgtgtaaaaaagctgcaaaggctggactgtct
cagtcactgtttgagagacttgtggttcttggcatcagaccaattcgccttcaggttcag
tacaggatgcatcctgctcttagtgcttttccatcaaacattttctacgaaggttccctt
caaaacggagtaactgcagcggatcgtgtgaagaaaggctttgacttccagtggccacaa
ccagacaagccaatgtttttttacgtcacccagggacaagaagagattgccagttcaggg
acttcttatctaaacaggacagaagctgctaatgttgagaaaattactaccaaacttttg
aaggcaggcgccaaaccagaccagattggtataattactccatatgaagggcagaggtcc
tacttggttcagtacatgcagttcagtggctctttgcacactaagctataccaggaggtg
gaaattgccagtgtagatgcttttcaaggaagagagaaagattttattatcctttcttgt
gttcgtgcgaatgagcaccagggaattggttttttaaacgatccccgtcgcttgaatgtg
gcattaacgagagcacggtatggtgtaatcattgtgggcaacccaaaggcactttcaaag
caacccctgtggaaccaccttctaaattactacaaggaacaaaaagtccttgttgaagga
ccactcaacaatcttagagaaagtctcatgcaatttagcaaacctcgcaaacttgtaaac
accattaatcctggggcacgttttatgacaacagcgatgtatgatgcccgtgaagcaata
atccctggatctgtgtatgaccggagtagtcaagctcgaccttcaaacatgtactttcaa
actcatgatcagatcggcatgattagctctggacccagtcatgtaactgccatgaacatt
ccaataccatttaatttagtcatgcctccaatgcctcctccaagttattttggacaagcc
aatggaccaactgcagctcattcatacattgaccgtatttcccaaggtcgtggaatgact
aaagggaaatcaccacgtggtggacgccagaaacagaggggcattgggcttcaaggcatg
agtcagggaaatatgccaaatagtcaggccagtcaagatgttgtatcccaaccattctct
caaggaccccttacccaaggatacatatccatgagccagccatcacaaatgagccagcca
gggctttctcaaccagaattatcacaggatagctaccttggtgatgaatttaagtctcag
attgatgttgcgttatcgcaggactccacttaccagggggagcgcgcctatcaacttgga
ggtgtgactgggctgtcacagtactag
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