Bufo gargarizans (Asiatic toad): 122930939
Help
Entry
122930939 CDS
T07965
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122930939 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgar03400
]
122930939 (LIG4)
Enzymes [BR:
bgar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122930939 (LIG4)
DNA repair and recombination proteins [BR:
bgar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122930939 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122930939
NCBI-ProteinID:
XP_044140621
EnsemblRapid:
ENSBGGG00000009657
LinkDB
All DBs
Position
3:222329398..222339434
Genome browser
AA seq
906 aa
AA seq
DB search
MSSNQLPLTVASQVPFADLCNTLERIQKCKNRTEKTKILKQFIDSWRKFHDALHKSEPTT
TDSFYPAMRLIVPQLERERMAYGIKETLLAKLYIKVLGLSKDGKDALKLLNYRTPTGSNS
DAGDFAAIAYFVLKSRCRKEGTLFIKDVNDQLDSIASNNAGKKKELIEKSLLHLIANSTA
LEQKWLIRMIIKDMKLGFSQQTVFSIFHPDAAELHNVTTDLEKVCLQLHDPNVCLSDVSI
SMFSAFKPMLAAIADIQHIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNGFEYTR
QFGGSPLEGSLTPYIHNVFRMDVQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVDDSDL
QTCFCVFDILMFNGQKLAHETLRKRYDILCDIFTPVPGRIHIVGKTEASTKKNVVDALNE
AIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGLRGGMM
SHFLCAVAEKPFAGEKPSVFHSLCRVGSGYTMKELYDLGLKLAPHWKPYRKRDPPTNLLC
GTEKPEVFIEPCNSVIIQVKAAEIVHSDMYKTNCTLRFPRIEKIREDKKWYDCMTLDDLE
QFREKASGKLASKHLDVSEEPPEKKRKTVPKIRKVIGVVSHLKAPDLTNISKQSNMFEEV
EFCVMSGTDEHSKAGLESMIAACGGIVVQNPGEDTYCVIVGTTNVRVKNIISSNKHDVVR
AAWLLECFENKTFVPWQPKHMIHMCLSTKEHFACEYDCHGDSYVTDTNESELKDLFTGMP
DPKDKIPLDMIADLEQRYSWENSFTSLFRQCVVYLDTYTTINDPLTIIENSTLSITALEL
RYNGAKVVSHLEDGVSHVVVGDDLSRLAEIKSLRRTLIRKFKIVRVLWVADSLKMGMLQM
EQDYLM
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatcaactgcccttaaccgtggcttctcaagtacctttcgcagatctctgt
aatactttagaaagaattcaaaaatgcaagaacaggacagagaaaacaaagattttaaag
cagtttattgactcttggagaaaattccacgatgcccttcacaagagcgaacctaccact
acggactctttttatccagctatgagacttattgtaccacagttagaaagagagcggatg
gcctatggaattaaggagactttgctggccaaactgtatatcaaagtgcttgggttgtct
aaagatggcaaagacgctcttaaacttttaaattatagaactcctaccggctccaattca
gatgcaggcgactttgctgcaattgcttactttgtgcttaagtcacgttgccgaaaggaa
ggaaccttgttcataaaagatgtgaatgatcaattggattcaatagcaagcaacaatgca
gggaagaagaaggaacttatagagaaaagtctgctgcatttaattgcaaactccactgcc
ctggaacagaagtggcttattaggatgattattaaggacatgaagcttgggttcagccag
caaacagtcttttccatctttcacccagatgctgcagaactgcacaatgtcaccacagat
ttagaaaaagtgtgtctacagctacatgacccgaatgtgtgccttagcgatgtctctatt
tcaatgttttctgcctttaaaccaatgcttgctgccattgctgacatacagcacatagaa
aaacaaatgaaccaccagagtttttatattgagacaaagcttgatggtgagaggatgcag
atgcacaaagatggagatgtctataaatacttttctcggaatgggtttgaatacactcgg
cagtttggtggttctccccttgaaggctccttgacaccatatattcataatgtctttcgt
atggatgtgcaaaactgcatacttgacggtgagatgatggcctacaatcctaacactcag
acgttcatgcagaaaggtaacaagtttgacatcaaaaggatggtggatgattcagaccta
cagacttgtttctgcgtgtttgacatcttgatgtttaatggccagaagttggcccatgaa
acacttagaaaaaggtatgatatcctttgtgatatctttaccccagttccaggaaggatt
cacatagttggcaaaactgaggccagtaccaaaaagaatgttgttgacgcactgaatgag
gcaattgataaccgcgaggaaggaattatggtaaaagaccctatgtccatttataagcca
gataagcgtggagaaggttggttaaagatcaaacctgagtatgttaatggactcatggat
gaattagatcttctgattattggtggatattggggcaagggtctacgtggtggtatgatg
tctcattttttgtgtgcagttgctgaaaaaccatttgcgggagagaagccgtctgttttt
cattcactttgtcgagttggctctggctatacaatgaaagaattatatgacctaggttta
aagttggctccacactggaagccttatcgaaaaagagatccacctacaaatcttttgtgt
gggactgaaaaaccagaagtatttattgagccttgtaattctgttattattcaagtgaag
gcagcagagattgttcacagtgatatgtacaaaacaaattgtactctccggttcccccga
attgagaagatcagagaggacaagaaatggtatgactgcatgacacttgatgacttggaa
caatttagagaaaaggcttctgggaaattagcatcaaaacacttggatgttagtgaagag
ccaccagaaaagaaacgaaaaactgtccctaagattaggaaagtaatcggtgtggtttct
catttgaaagcgcccgatcttaccaacatctcaaagcagtcaaatatgtttgaagaggtt
gagttctgtgtgatgagcgggacagatgagcattcaaaagcaggtttagagagcatgata
gctgcttgtggtggcatagtggtgcagaatcctggagaagacacgtattgtgttattgta
ggaactacaaatgtcagagtgaaaaatattatctcgtctaataagcacgatgttgttaga
gccgcttggcttcttgagtgctttgaaaataaaacctttgtaccttggcaacctaaacat
atgattcatatgtgtctgtccaccaaggaacattttgcttgtgaatatgactgccatggt
gacagttatgtgacagatactaatgagtctgagttgaaggacctgtttaccggaatgcct
gacccaaaggacaaaatcccactggacatgattgctgaccttgagcaacgctattcatgg
gaaaattcttttaccagtctgttccgtcaatgtgttgtatatctagatacatatacaact
attaatgacccactcactataattgaaaattctactttgagtataacagcattggagcta
cgctataatggagcaaaagtagtcagccatcttgaagatggcgtgtcacatgttgtggta
ggtgatgacttgtctcgtttggccgaaattaagagtctgagaaggacactgatcagaaaa
tttaagattgttcgagtcctgtgggtagctgattctctgaagatgggaatgcttcagatg
gagcaggattatttaatgtaa
DBGET
integrated database retrieval system
