Burkholderia sp. CCGE1003: BC1003_1569
Help
Entry
BC1003_1569 CDS
T01314
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgf
Burkholderia sp. CCGE1003
Pathway
bgf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BC1003_1569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgf03400
]
BC1003_1569
Enzymes [BR:
bgf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BC1003_1569
DNA repair and recombination proteins [BR:
bgf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BC1003_1569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADN57539
UniProt:
E1T7A9
LinkDB
All DBs
Position
1:1796833..1799757
Genome browser
AA seq
974 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGTRPAKKRGGRGAAHPEAAEGLSYVIQEHHARRLHYDFR
LELNGALLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPLGGPAEAARAYRAGKLKFHLHGEKLHGGWTLVRSHMRGNADKEQWLLIKEPDDEARD
ESEYDILAERPGSVLGGESAPAKAKGKAKGGSRAATGKSQMASVRGDPKRPDIVATRSNE
SLRELAASPAIEGAVKARLPAALKPQLATLVDATPPGDDWAYEIKFDGYRVLARIDASAK
GHGVQVFTRAGNDWTARFSRQVKAFGQLGLESAWLDGEAVVLDENGVPSFQALQNAFDSN
RPQDIVVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFSADDLLKS
ACDMALEGIIGKRRDSGYVSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVH
DSKGKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASPPRERSRTPVHWVEPVLVAE
CNFAEWTSDGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEADTAPKKRAARSK
GTGKTAAATADELAEGTAEKNARKPVEPAAKSAAKPAAKAAAKSGASAKRTATSDTDNDT
ENDTHAQSPASRSRKSASPAEVAGVRISHPDRVIDKSTGARKIDLVQYYESVARWMLPHL
ADRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQHPGLDPGHPPLITVDSVKALVGAAQM
GTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWERMIEAALLTRTLLEELGLTSFCKTSG
GKGLHVVVPLAKHAGWDEVKGFSQAVAQHMASTLPKYFSAKMGAQNRKQKIFVDYLRNNR
GSSTVAAFSVRARPGLGVSVPLAWDEVAQTTGGDQWNIRNLHERLAQLKSDPWAEYPKTR
QRITAAMRKRLSGA
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgacctgtacaaccgcaagcgccgtttcgacgaaacgccggagccc
gcgggcacccgcccggcgaagaaacgcggcggccgtggcgcggcgcaccccgaggcggct
gagggactctcgtacgtgatccaggagcaccacgcgcggcgtctgcattacgacttccgg
ctcgaactgaacggcgcgctgctctcgtgggcggtgccgaagggtccgtgtctcgatccg
tcggtcaagcgccttgcggtgcatgtggaagaccatccggtcgaatacggcagcttcgaa
ggcgagattccgcctggcaattacggcgcgggcacagtgatcgtatgggaccgcggcacc
tgggagccgctcggcggaccagccgaggcggcgcgcgcctatcgcgccggcaagctcaag
tttcatttgcatggcgagaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcaacgcggacaaggagcagtggctcctcattaaggaacccgacgacgaggcgcgcgac
gaaagcgaatacgacattctcgctgaacggcccggcagcgtgctgggcggcgagtccgcg
cctgcgaaggcgaaggggaaggccaagggcggcagccgcgccgcaaccggaaaaagccag
atggcttcggtgcgtggcgacccgaagcgccctgacatcgtggcaacgcgcagcaacgag
tccctgcgcgaactcgccgcatcgccggctatagaaggggcggtgaaagcgcgcctgcct
gccgcgctcaagccgcaactggcgacgctcgtcgacgccacgccgcccggcgacgactgg
gcgtacgagatcaagttcgacggctatcgcgtgctcgcccgcatcgacgcgagtgcgaaa
ggccacggcgtgcaggtgttcacgcgcgcgggtaacgactggaccgccaggttcagccgg
caggtgaaagcgttcgggcagctgggactggagagcgcgtggctcgacggcgaagccgtg
gtgctcgacgagaacggcgtgccgagcttccaggcgctgcagaacgcgttcgactccaac
cggccgcaggacattgtcgtgtatctgttcgacgtgccgtttctgaacggctacgacttg
cgcggcgtgccgctgcaacagcgccgcgcgatcctgcgcgcgcttctcgaaccggtcgac
gacagcgtgctgagattttcgaacgatttcgaattcagcgccgacgacctgctgaaaagc
gcgtgcgacatggcgctcgaaggcatcatcggcaagcggcgcgacagcggctatgtgtcc
ggccgctcggcgacgtggatcaagctgaagtgccgccgccgtcaggagttcgtgattggc
ggctattcggaaccgtcgggcagccgcgcggcgttcggcgcgctgctattgggcgtgcac
gacagcaaaggcaagctgcagtatgcagggcgcgtcggcacaggattcgacgctgcgttg
ctgcgctcggtgaagaaggaactcgacgcgcatgagacgaagcgcatgccgttcgcgagc
ccgccgcgtgagcgcagtcgcacgccggtgcattgggtggagccggtgctggtcgccgaa
tgtaattttgccgaatggacgagcgacggcatcgtgcgccaggcgtcgttcgtgagtctg
cgcaaggacaagccggcgcgccagatcgtcaaggaagcaccacgaaaaggggacgacgtg
caacagcaaaccgatatcgaagccgacaccgcgccgaagaaacgtgcggcgcgcagcaag
gggacaggcaaaacggcagctgcgacagctgacgaactcgcggaaggaaccgctgaaaaa
aacgccaggaagccagttgaacccgcggctaagtccgcggctaaacccgcggcgaaagca
gcggcgaaatccggcgcatcggcgaagcggaccgccacgagcgacactgacaacgacact
gagaacgacacccacgcgcagtcccccgcgtcgcggtccagaaaatcggcgtcgcctgcg
gaagtcgccggggttcgcatatcgcatccggaccgcgtgatcgacaagagcaccggcgcg
cgcaagatcgacctcgtgcagtactacgaatcagttgcgcgatggatgttgcctcatctc
gccgaccggccagtgtcgctcgtgcgtgcgccggaggatatcggcggcgaactgtttttc
cagaagcacacacagaaactttcgatccccaacatcacgcagcatcccgggctcgatccg
gggcatcctccgctcatcacggtggatagcgtcaaggcgctggtcggcgcggcgcaaatg
ggcaccatcgaatttcacacgtggaacggcgtggcgtcgaatatcgaaaagcccgaccgc
gtcgtattcgatctggacccggacccgtcgcttggctgggagcgaatgatcgaggccgcg
ctgctgacacgcacgctgctcgaggaactcgggctcacgtcgttctgcaagacgagcggc
ggcaagggcctgcacgtcgtcgtgccgctcgcgaaacacgcgggctgggacgaagtgaag
gggttctcgcaggccgtcgcgcagcacatggcaagcacgttgcccaaatacttcagcgcg
aagatgggcgcgcagaatcgcaagcagaagatcttcgtcgactatctgcgcaataaccgc
ggctcgagcacggtcgcggcgttttcggtgcgggcgcggccggggctcggcgtttcggtg
ccgctcgcgtgggacgaagtcgcgcagaccacgggcggcgatcagtggaacatcaggaac
ctgcacgagcgcctcgcccaattgaagagtgacccgtgggccgagtatccgaagacgcgt
cagcgcattaccgcggccatgcgcaagcgcctgagcggcgcatag
DBGET
integrated database retrieval system