Brachybacterium ginsengisoli: CFK41_09415
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Entry
CFK41_09415 CDS
T05099
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFK41_09415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgg03400
]
CFK41_09415
Enzymes [BR:
bgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFK41_09415
DNA repair and recombination proteins [BR:
bgg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFK41_09415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATG54958
UniProt:
A0A291GXR2
LinkDB
All DBs
Position
complement(2111385..2113958)
Genome browser
AA seq
857 aa
AA seq
DB search
MATDEQSVRIEDRTLKVSNLEKVFFSSTGTTKGEVLDYYRRIAAVMIPQARRRPATRKRW
VDGVGTADRPGTVFFRKDLEDRAPSWVPRADLEHSDGVSTYPLVDETAVLVWLAQLAALE
IHTPQWRFDEDLTASNPDRLVLDLDPGPGADLTDCARVALWCREILEDMAMESFPVTSGS
KGIHLYAPLDGAATAQQITQVAHELARALEEDHPDLVVSDMKKSLRSGRVLVDWSQNNGH
KTTVCPYSLRGRLRPSVAAPRTWEEIEDPELDQLELGDVLRRVEDGMDPIAALGSSAGKG
GTEGGASSGGRSRDRLEVYRSRREASRTPEPVPEGRPDPEGARDPREPEDPMFVIQEHHA
SRLHWDFRLEHDGVLVSWAVPKGPPVDVDVNRLAVQTEDHPLEYGTFEGTIPKGEYGAGD
VTLWDTGSLEVETWRDGEEIVVVCHGRPDGGLGGAPRRFAFVHTGGMGGNGDPTSGRADA
SWLLHLTKDQPPTGEEPASCEGRGRPREERAPSASSPTSASSSGARPEPAAMSDPISPML
ATLGSRDDIRDQDDWAFEMKWDGVRVVATVTAEAVRLTSRGGKDLTSTFPELAELLEALD
PAALAAGETVLDGEIVALDARDRPSFSRLQRRLGLTRDRDVERARKEVEAHVMIFDLLRR
GGVPLLRTPYRERRSALFDTVRSTEHIHVPQADHGDVDHAIELSKELQLEGVMAKTETGV
YQPGRRSRTWIKIKNARHQEVVVIGWRHGKGGRSGSIGSLLLAIPDGEGVLRYVGRVGTG
FSDRDLEQITSTLASRARRTPPADDVPAADRRDAEWVRADLVGEVRYSERTEDGRLRHPV
WRGWRRDKQAHEVRGEQ
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgatgagcagagcgtcaggatcgaggaccgcacgctgaaggtgtcgaacctc
gagaaggtcttcttctcctccacggggaccaccaagggagaggtgctggactactaccga
cgcatcgccgcggtgatgatcccgcaggcgaggcggcgcccggcgacccgcaagcggtgg
gtcgacggggtggggaccgccgatcggcccggcacggtcttctttcgcaaggatctcgag
gatcgcgccccgtcgtgggtgccgcgtgcggacctcgagcacagcgacggcgtctccacc
tatccgctggtcgacgagaccgccgtgctggtgtggctcgcgcagctggcggcgctcgag
atccacacgccccagtggcgattcgacgaggatctgacggcgtcgaaccccgaccgcctc
gtgctggacctcgaccctgggccgggagccgacctcacggactgcgcccgcgtcgccctg
tggtgccgcgagatcctggaggacatggcgatggagtccttcccggtcacctccggctcc
aagggcatccacctctacgcgccgctggacggcgccgccaccgctcagcagatcacccag
gtcgcccacgaactggcgagggcgttggaggaggatcatcctgatctcgtggtcagcgac
atgaagaagtcattgcggtcgggcagggtgctcgtggactggtcgcagaacaacgggcac
aagaccacggtgtgcccctactcgctgagaggacggctgcgcccatcggtggcggcgccc
cgcacgtgggaggagatcgaggaccccgagctcgatcagctcgagctcggcgacgtcctg
cgtcgggtcgaggacggcatggacccgatcgcggcgctgggctcgagcgccgggaagggc
gggacggagggcggcgcctcgtcgggcgggcggtcgagggaccgcctggaggtctaccgc
tccaggcgggaggcgtcgaggacacccgagcccgtcccggagggacggccggatccggag
ggggcacgtgaccctcgcgagccggaggacccgatgttcgtgatccaggagcaccacgcg
tcccgactgcactgggacttccgtctcgagcacgacggggtgctggtctcctgggctgtg
cccaagggccccccggtcgacgtcgacgtgaaccgccttgcggtgcagaccgaggaccac
ccgctcgagtacgggaccttcgagggcacgatcccgaagggcgagtacggcgccggcgac
gtcaccctctgggacaccgggtccctggaggtcgagacgtggcgcgatggagaggagatc
gtcgtcgtctgccacggtcgcccggacggtggcctcggcggcgcgccacgccgtttcgcc
ttcgtccacaccggcggcatgggcgggaacggtgatcccacgtcggggagggccgatgcc
agctggctgctgcacctcacgaaggaccagccgccgacgggggaggagccggcgtcgtgc
gaggggcgggggaggcctcgggaagagcgcgctccttcggcgtcttcccccacctcggcg
tcgtcctcgggggcccggcccgagccggccgccatgagcgatccgatctcgccgatgctc
gccactctcgggagccgggacgacatccgtgaccaggacgactgggccttcgagatgaag
tgggacggggtgcgtgtcgtcgccacggtcacggcggaggcagtccgcctgaccagccgc
ggtggaaaggacctcacctccaccttccccgagctcgccgagctgttggaggcgctcgat
cccgcggccctcgctgcgggggagaccgtcctcgacggtgagatcgtcgcactcgacgcc
cgcgaccgcccctccttctcccgactgcagcgacgactcggtctcacgcgagaccgcgat
gtggaacgggccaggaaggaggtcgaggcgcatgtgatgatcttcgacctgctccggcgc
ggaggcgttccgctgcttcgcaccccgtaccgcgagcgccgatccgcgctgttcgacacg
gtgcggtcgaccgagcacatccacgtgccgcaggcggaccacggcgacgtcgaccacgcc
atcgagctctcgaaggagctccagctcgaaggcgtcatggcgaagaccgagacgggtgtc
taccagcccggcaggcgcagtcgcacctggatcaagatcaagaacgcccgccaccaggag
gtcgtggtcatcggctggcgacacgggaagggcggtcgctccgggagcatcgggtccctg
ctgctggcgatccccgacggggagggtgtcctgcgctacgtcggtcgtgtcgggacggga
ttcagcgaccgggatctcgagcagatcacgagcacgctcgcctcccgtgcccgcaggacg
ccaccggcggacgacgtgcccgctgcggatcgccgcgatgcggagtgggtgcgtgcggac
ctcgtcggggaggtccggtacagcgagcgcaccgaggacggccgcctgcggcatcctgtg
tggcggggatggaggcgtgacaagcaggcgcacgaggtacgaggagagcagtga
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