Brachybacterium ginsengisoli: CFK41_10205
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Entry
CFK41_10205 CDS
T05099
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFK41_10205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgg03400
]
CFK41_10205 (mfd)
Enzymes [BR:
bgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFK41_10205 (mfd)
DNA repair and recombination proteins [BR:
bgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFK41_10205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ATG55089
UniProt:
A0A291GXY9
LinkDB
All DBs
Position
complement(2294685..2298296)
Genome browser
AA seq
1203 aa
AA seq
DB search
MTAQTAAPTPTTAHPPLRPLLDQLAAGRDLTAVRSLVAEGTESGEGGSIVAATGLFPFLV
ADLARQATAEEPLVIVTPTTRAADDLRSALSALVGTEHLVELPAWETLPHERLSPRADTV
AKRLSTLRRIAHPETEDPAHVVLMPVRSLLQPIAKGLGDLRPVRAAVGDTYALEDIERDL
VDAAYVRVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEIDDVRYFSVADQRSLDP
APRGLDAPPCREILLTPAVRERARSRAEELPGVRDLLLRIADGIAADGMESLSPVLVGEM
EQVADVLPAGARFLVLDPEKARARADELVATTEEFLAAAWSSAAAGGGLPIDVGAASFVP
LSEAKGHAREGGRPWFTLAAFGLDTDVDLTTSSTTHPGYSGRAGDAAKDLEKRRTEGWSV
VATMVGPGGARHVTENLRADGMPAVFAPELSDPVGPGEAVVTVGPFVEGLVDADLKLVLA
AERDLTGKSGARRGEDRKMPSRRRNVVDPLQLRPGDHVVHSHHGVGRFVEMTSRAVGVGA
KRTTREYLVIEYAASKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSRA
RKAIREIADELVRLYSARQSAPGHAFGPDTPWQLELEDSFEFVETPDQLSTIDDVKGDME
KTVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHLDTFTERYTGFP
VTVRGLSRFQNPGDSTATIEGLADGSVDVVIGTHRLLTGSVRFKDLGLLIVDEEQRFGVE
HKETLKALRTNVDVLSMSATPIPRTLEMAVTGIREMSILATPPEERHPVLTYVGAQEDKQ
VTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVIVDF
WERDFDVLVCTTIVETGLDIANANTLIVENADKFGLSQLHQLRGRVGRSSERAYAYFLYG
ATKPLTELAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVAAFRGESAAPEKEIRVELPLDAHVPHDYIGSERLRLEAYSKLSAVREVSEIEQI
RAELSDRYGAPPAPVEVLLDVARFRIDARAAGVDEIQAQGKMIRFAHVEVADSVAMRMKR
LYPGTVLKPAVRQVLVPRPMTSRFGGTELRDHELLDWAREVLRTLVPGAAEQIAAPTVKG
SAK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgcagaccgccgcccccaccccgacgaccgcgcacccgccgctgcgcccgctg
ctggaccagctggcggccggccgggacctcaccgcggtccggtcgctggtcgccgagggc
accgagtcgggcgagggcggcagcatcgtcgccgccaccgggctgttccccttcctcgtg
gccgacctcgcccggcaggccaccgccgaggagcccctggtcatcgtcaccccgaccaca
cgggcggccgacgatctgcgctccgccctcagcgccctcgtcggcaccgagcatctggtc
gagctgcccgcctgggagaccctgccccacgagcggctctccccgcgcgcggacaccgtc
gccaagcggctctcgacgctccgccgcatcgcgcaccccgagaccgaggaccccgcccac
gtggtcctgatgccggtgcgctccctcctgcagcccatcgcgaaggggctcggggacctg
cgccccgtgcgcgccgcggtaggggacacctacgcgctcgaggacatcgagcgcgatctc
gtcgacgccgcctacgtccgggtcgacatggtcgagaagcgcggcgagttcgcggtgcgc
ggcgggatcctggacgtcttcccgcccaccgagccgcacccggtgcgcgtggacctcttc
ggcgacgagatcgacgacgtccgctacttctccgtcgcggaccagcgctccctggacccg
gcgccgcggggcctggacgccccgccctgccgcgagatcctcctgacccccgcggtgcgc
gagcgcgcccggtcccgcgccgaggagctgcccggcgtgcgcgatctgctgctgcggatc
gccgacgggatcgcggccgacggcatggaatcgctcagcccggtcctcgtcggcgagatg
gagcaggtcgccgacgtgctcccggccggcgcgcgcttcctggtgctggacccggagaag
gcccgcgcccgggccgacgagctggtcgccaccaccgaggagttcctcgccgcggcgtgg
tccagcgccgccgccgggggagggctcccgatcgacgtgggcgcggcgagcttcgtgccg
ctgtccgaggcgaaggggcacgcccgcgagggcgggcggccctggttcaccctggcggcc
ttcggcctggacaccgacgtcgacctcaccacctcctcgaccacccaccccggctactcc
ggacgcgcgggggacgccgcgaaggatctcgagaagcgccgcaccgagggctggtccgtc
gtggccaccatggtcgggcccggcggcgcccggcacgtgacggagaacctccgcgccgac
gggatgcccgcggtcttcgccccggagctctccgaccccgtcggacccggcgaggccgtc
gtcaccgtcggccccttcgtcgagggactggtcgacgccgacctcaagctcgtcctggcc
gccgagcgggacctcaccggcaagtccggggcgcgccgcggcgaggaccgcaagatgccc
tcgcggcgccgcaacgtcgtggacccgctgcagctgcgccccggggaccacgtcgtccac
tcccatcacggcgtgggacgcttcgtggagatgaccagccgcgccgtgggcgtcggcgcc
aagcgcaccacccgcgagtacctggtcatcgagtacgcggcctccaagaagggtcagccg
ggcgatcgcctctacgtgcccagcgaccagctcgaccaggtcacgaagtacgtcggcggc
gaggagccctccgtcaaccggatgggcggtgccgactgggcgaagaccaagtcccgggcg
cgcaaggcgatccgcgagatcgccgacgagctggtgcgcctgtactccgcccggcagtcc
gctccgggccacgccttcggtcccgacaccccctggcagctggagctcgaggactccttc
gagttcgtcgagacgccggatcagctctcgaccatcgacgacgtcaagggcgacatggag
aagacggtccccatggaccggctgatcctcggcgacgtcggctacggcaagaccgagatc
gcggtgcgcgccgcgttcaaggcggtccaggacggcaagcaggtcgccgtcctcgctccc
accaccctgctcgcgcagcagcacctggacaccttcaccgagcggtacaccggtttcccg
gtcaccgtgcggggcctctcgcgcttccagaacccgggcgactccacggccaccatcgag
ggcctcgccgacggcagcgtcgacgtggtgatcggcacccaccgcctgctcaccggcagc
gtccgcttcaaggacctcggtctcctgatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagacgctcaaggcgctgcgcacgaacgtcgacgtgctctcgatgtccgcgacg
ccgatcccgcgcaccctcgagatggcggtcaccgggatccgcgagatgtcgatcctggcc
accccgcccgaggagcgccacccggtgctgacctatgtcggcgcccaggaggacaagcag
gtcaccgccgcgatccggcgcgagctgctgcgtgagggccaggtcttctacatccacaac
cgggtcgaggacatcgatcgggtcgccgcgcatctgcgcgagctggtgcccgatgcacgg
gtccaggtcgcccacggcaagatgaacgagcaccagctcgagcgcgtcatcgtcgacttc
tgggagcgggacttcgacgtgctggtgtgcaccaccatcgtcgagaccgggctggacatc
gccaacgccaacaccctgatcgtcgagaacgccgacaagttcggcctctcgcagctgcac
cagctgcgcgggcgcgtcggccgctccagcgagcgcgcctacgcctacttcctctacggc
gcgaccaagccgctcacggagctcgcgcatgatcgcctcaccaccctcgccaccaacacc
gacctcggggccggcatgcaggtggcgatgaaggacctcgagatccgcggggccggcaac
ctcctgggcggggagcagtccggccacatcgccggggtgggcttcgacctctacgtgcgg
atggtgggggaggccgtcgcggccttccgcggcgagtccgcggcgccggagaaggagatc
cgggtcgagctgccgctggacgcccatgtcccgcacgactacatcggctccgagcgcctg
cgcctggaggcctactcgaagctgtccgcggtgcgggaggtctcggagatcgagcagatc
cgcgcggagctctcggaccggtacggcgcgccgcccgccccggtcgaggtgctgctggac
gtggcgaggttccggatcgatgcccgggccgccggggtcgacgagatccaggcccagggc
aagatgatccgcttcgcccacgtggaggtcgcggattccgtcgcgatgcggatgaagcgc
ctctacccggggacggtgctcaagcccgccgtgcggcaggtcctcgtccctcggccgatg
acctcgcgcttcggaggcaccgagctgcgggaccacgagctgctcgactgggcccgtgag
gtgctgcgcacgctcgtccccggcgcggcggagcagatcgcggcgcccacggttaagggc
tcggcgaagtag
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