Brenneria goodwinii: AWC36_05610
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Entry
AWC36_05610 CDS
T05061
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgj
Brenneria goodwinii
Pathway
bgj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWC36_05610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgj03400
]
AWC36_05610
Enzymes [BR:
bgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWC36_05610
DNA repair and recombination proteins [BR:
bgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWC36_05610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATA23623
UniProt:
A0A250BBL6
LinkDB
All DBs
Position
complement(1242679..1246128)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPEKYRYTLPLKSGEQRLLGQLTGAACAVECAEIIDRHAGLVILIAPDMQNALRLHDEIQ
QFTDQPVTTLPDWETLPYDSFSPHQEIISNRLATLYQLPLMERGVLILPVNTLMQRVCPH
NFLHGHALMLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSDEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVPLINLLPAHEFPTDKNAIELFRSQWREQFEVRRD
AEHLYQQVSKGTWPAGIEYWQPLFFNQPLPSLFSYFPDHTLIVNTGDIEQGADRFWQDTQ
QRFESRRVDPMRPLLPPESLWLRIDSLFAELKKWPRIQLRTDTLPKKAANENLGYQPLPD
LAIQHQQKAPLDPLRRFIEQFDGQVIFSVESEGRRETLQELLARIKLKPAPIDRLEQAQK
RGAYLMIGASEHGFIDTLSQRALICESDLLGERVNRRRQDNRRAINTETLIRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDVYAQRAVKSGFAFKHDKEPYQHFCAAFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPIKIEMISRFRSAREQTQILDETREGKVDILIGTHKLLQSDVHW
HDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILREILRGGQVYYLYNDVENIEKATQKLSELVPEARITI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMANVGFSLYMELLESAVDALKAGREPSLEDLISSQTDVELRLPALLPEDFIPDV
NTRLSFYKRIASAKQPGELDELKVELIDRFGLLPDAARHLLQVAALRQQAQSLGIKRIEG
NEKGGFIEFSEQNRVDPTHLIGLLQQSPGTYRLDGPSRLKFIKDLSARPQRIEFIQSLLI
SMAQHTLAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaatatcgttatacgttgccgcttaaatcgggcgagcaacgcctgctggga
caactgaccggcgccgcctgcgcggtggaatgcgcagaaattatcgatcgccacgccggg
ctggtcattctcatcgcccccgatatgcagaacgctttacgtctgcacgatgaaattcag
caatttaccgaccaacccgtcacgaccttaccggactgggaaacattgccttacgacagt
ttttctcctcatcaggaaattatttccaaccggcttgccacactgtatcagttaccgcta
atggaacgcggggtactgatcctgccggtcaataccctgatgcagcgggtctgtccgcat
aattttttgcacggacatgccctgatgctgaaaaaaggtcagcggttgtcgcgcgataaa
ctgcgttcgcagttggagcaggccggctatcgcagcgtcgatcaggtgatggagcacggg
gaatttgccacccgcggcgcgctactggatcttttcccgatggggagcgatgaaccttat
cgaatcgatttttttgacgacgaaatcgacagtctgcggctgtttgatgtggacacgcag
cggacattaaatgaagttccgctcatcaatctgctgcccgcccatgagttcccaacggat
aaaaacgccatcgagctgttccgcagccagtggcgcgaacagtttgaagtccgccgcgat
gccgaacatctttatcagcaagtgagtaaaggcacctggcccgcgggcatcgaatactgg
caaccgctgttttttaatcaaccgctgccgtcgctgttcagctacttcccggaccacacg
ctgattgtcaataccggagatatcgaacaaggggcggatcgtttctggcaggatacccag
caacgcttcgagagccgccgggtcgacccgatgcgtccgctgttgccgcctgagtcatta
tggctacgcatcgacagcctgttcgccgaattgaaaaagtggccgcgcattcagctgcga
accgacacgctgccgaaaaaagccgctaatgaaaatctgggttaccagccgctgcccgac
ctggccatccagcaccagcagaaagcgccgctggatcccctgcgccgctttatcgaacag
tttgacggtcaggtcattttttccgtcgagagcgaaggccggcgcgaaacgctgcaagag
ttgctggctcgtatcaaactgaaacctgcgccgatagatcgcctggaacaggcgcaaaaa
cgcggcgcttatctgatgattggcgccagcgagcatggttttatcgatacgctcagccag
cgagccctgatttgcgaaagcgatctattgggcgagcgcgtcaaccggcggcggcaggat
aaccggcgcgccatcaataccgagacgttgatccgtaatttggcggagcttcgtcccggt
cagccggtggtgcatctggagcacggcgtcggccgctatgccggcttaaccacgttggaa
gcgggcggcatcaaggccgaatacctgatcctgacctatgccggggaagataaactttac
gtaccggtttcatctctgcatctgatcagccgttacgccggcggcgccgacgaaagcgcg
ccactgcacaaactgggcggcgatgcgtggtcgcgcgcccggcagaaggccgccgagaaa
gtgcgcgatgtggcggcggagctgctggacgtctatgcccagcgtgcggtgaaaagcggt
tttgccttcaagcatgataaagaaccatatcagcatttctgcgccgcgttcccttttgaa
accacgcccgatcaggctcaggcgattaacgccgtgctgagcgatatgtgtcagccgctg
gcgatggatcggttggtgtgcggcgacgtcggcttcggtaaaaccgaagtcgccatgcgt
gccgccttcctggcggtggaaaatcataaacaggtggcggtactggttccgaccaccctg
ctggcccaacagcattacgacaatttccgcgatcgttttgccaactggccgataaaaatt
gagatgatctcccgatttcgcagcgcacgcgaacaaacgcagattttggatgaaacgcgg
gaaggcaaagtcgatatcctcatcggcacgcataaactgttgcagagtgatgtgcactgg
cacgatttgggactgctaattgtggatgaagagcaccgtttcggcgtgcgccataaagag
cggattaaagcgatgcgcgccaacgtggatatcctcacgctgaccgcgacgccgatcccg
cgtaccttaaatatggcgatgagcggcatgcgcgacctctcgattatcgccaccccgccc
gcccgtcgtctggcggtgaaaaccttcgtgcgggaatacgacgcgctggtggtgcgcgaa
gccattctgcgtgaaattctgcgcggcggtcaggtttactatctctacaatgatgtggaa
aacattgagaaggccacccagaagctgtccgaactggtgccggaagcgcggattaccatc
ggccacgggcagatgcgcgagcgcgagctggagcgggtgatgaatgatttccatcatcag
cgtttcaacgtgctggtctgcaccaccatcatcgaaaccgggatcgatattcccagcgcc
aataccatcatcattgaacgggccgatcacttcggtctggcgcagttgcaccagttgcgc
ggccgcgttgggcgctcgcatcatcaggcctatgcctatctgctgacgccgaatcccaaa
gcgatgagcagcgacgcgcataagcgtctggaagccatcgcctcgctggaggatttaggc
gccggctttgcgctcgccactcatgatctggaaatccgcggcgccggcgaactgctgggc
gaagaccaaagcggacagatggccaacgtcggtttctcgctgtacatggagttactggag
agcgccgttgatgcgttgaaagccggccgcgaaccgtcgttggaagatctgatcagcagt
cagaccgacgttgaactgcggctacccgcgctgctgccggaagactttattcccgacgtg
aacacgcggctgtctttctataaacgcatcgccagcgccaagcagccgggcgaactggat
gaactcaaggtcgaactgatcgatcgtttcggcctattgccggacgccgcgcggcatctg
ttgcaggtggcggcgctccgccagcaggcgcaatcgctgggaatcaaacggatcgaaggc
aatgaaaaaggcggctttatcgagttcagcgaacagaaccgcgttgatccgacgcatctg
atcgggctgcttcagcaaagtcccggcacctaccgcctggatgggccttcacgcctgaaa
ttcatcaaagatttaagcgcccggccgcaacgtattgagtttatccaatcgctgttaatc
agtatggcccagcatacgctggcggcgtaa
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