Bradyrhizobium genosp. L: IC762_27605
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Entry
IC762_27605 CDS
T09261
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgk
Bradyrhizobium genosp. L
Pathway
bgk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IC762_27605 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgk03400
]
IC762_27605 (ligD)
Enzymes [BR:
bgk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IC762_27605 (ligD)
DNA repair and recombination proteins [BR:
bgk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IC762_27605 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QPF83444
UniProt:
A0A7S9GRQ4
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All DBs
Position
complement(5798659..5801289)
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AA seq
876 aa
AA seq
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MPLKNLSTYRKKRDFEKTSEPSGEVKVAPAELRRFVVQKHDATRLHYDFRLEFDGTFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVQLWDRGFWQSDDPERGF
RKGDLKFTLDGEKLHGSWVLVRMKSDRYGGKRTNWLLIKHRDEYAVEGNGEEILAEDRSV
ASGRSMDQIASGKGKAPKPFMLAKGNGKAKADAVWHSNHGLAADERARTKAPAPKAQPKP
KQVAEMPAFVSPQLCAAVDTPPGGAGWCHEIKFDGYRVQLRVEDGEAVLKTRKGLDWTGK
FGAIAKEAGRLPDVLIDGEIVALDKHGTPHFSTLQAALSDGKTDRLVFYAFDLLFEGTND
LRPLPLAERKARLKALLEARKGKNPVIRYVEHFEESGPAVLESARKLKLEGIVSKRLDGA
YRSGRSDDWTKAKIRAGQEVVLGGWKTTNGKFRSLMAGVYRGDHLVFVGIVGTGFGQDTV
RRIMPALKAAASDNSPFGGKDAPKKTRDVHWLKPELVAEIEFGGWTDAGNIRQAAFKGLR
QDKPAHEVEAEMPVATRVVKPMAKSAAKGTASKGAAKSEVMGVVISHPDKALWPDAGDGE
PVTKLDLARYFEAVGEWMMSYLKGRPCSIVRAPDGINGETFFQRHAMAGTSKLLKLAKVA
GDRKPYLQIDQVEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFADVVEA
AKEMRERLTAVGLESFCKTTGGKGLHVVAPLLSGGKDKVTWKEAKAFAQAICQWMEQDDP
ARYLINMSKAKRTGKIFLDYLRNDRLSTAVAVLSPRARPGATVSMPLTWTQVRGDLDPTK
YTLRSVPALLAKSKAWDGYEDAAGSIRSAIKKLAAQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
gtgccgctgaaaaacctgtcgacctaccgcaagaagcgcgatttcgagaagaccagcgag
ccgtccggcgaggtcaaggtggcgccggccgagctgcggcgcttcgtggtccagaagcac
gatgcgacccggctgcactatgatttccggctcgaattcgacggcaccttcaagtcttgg
gcggtgacgcgcgggccctcgctcgatccgcacgacaagcggctcgcggtcgaggtcgag
gaccatccgctcgactacggcgacttcgaaggcaccattcccgaggaccagtatggtggc
ggcacggtgcagctctgggatcgcggcttttggcaatccgacgaccccgagcgcggcttc
aggaagggcgatctgaagttcacgctcgacggcgagaaactgcatggcagctgggtgttg
gtgcggatgaagagcgaccgctatggcggcaagcgcaccaactggctcttgatcaagcat
cgcgacgaatatgccgtggaaggcaacggcgaagagatccttgcagaggaccgctcggtc
gcatccggccgctcgatggatcagatcgcatcgggcaagggcaaggcgccaaagccgttc
atgttggcgaagggcaatggcaaagccaaagccgatgcagtctggcactccaatcacgga
ttggctgcggacgagcgcgccaggaccaaggcaccggcgccgaaagcgcagccgaagccg
aagcaggtcgcggagatgccggcctttgtctcgccacagctctgcgccgccgtcgacacg
ccgcccggcggcgcgggctggtgccacgagatcaaattcgacggctaccgtgtgcagctt
cgcgtcgaggacggcgaagccgtgctgaagacccgcaaggggctcgactggaccgggaaa
ttcggcgcgatcgccaaggaggccggcaggctgccggatgtcctgatcgacggtgagatc
gtcgcgctcgacaagcacggcaccccgcatttctcgacgctgcaggccgcactctccgac
ggcaagaccgaccggctggtgttctacgcgttcgacctgctgttcgagggcaccaatgat
ttgcgtccgctgccgcttgccgaacgcaaggcgcggctgaaggcgttgctcgaggcgcgc
aagggcaaaaacccggtgatccgatatgtcgaacatttcgaggaaagcggcccggcagtg
ctggaatcggcgcgcaagctgaaactcgaaggcatcgtctccaagcggctcgatggcgct
tatcggtctggtcgttccgatgactggaccaaagcaaaaatccgcgccggccaggaggtg
gtgctcggcggctggaaaacgaccaacggcaaattccgctcgctgatggccggcgtctat
cgcggcgatcatctcgtctttgtcggcatcgtcggcaccggattcggccaggacacggtc
cgccgcatcatgccggcgctgaaggcggcggcgtcggacaacagcccgttcggcggcaag
gacgcgccgaagaagacccgcgacgtgcactggctgaagccggagctggtcgccgagatc
gagttcggtggctggaccgatgccggcaatattcgccaggccgcgttcaagggcctgcgt
caggacaagccggcgcacgaggtggaggccgagatgccagtcgcaaccagggtggtgaag
ccgatggcgaagagcgcggcaaaaggcactgcgagcaagggtgcggcaaagagcgaggtg
atgggcgtcgtcatctcgcatccggacaaggcgctgtggcccgacgccggcgacggcgag
ccggtgaccaagctcgatcttgcacgatattttgaggcggtcggcgaatggatgatgtct
tatctcaagggccggccgtgctcgatcgtgcgcgcgcccgacggcatcaacggcgagacc
ttcttccagcgccacgccatggccggtacctcgaagctgttgaagctcgccaaagtggca
ggcgaccgcaaaccctatctacagattgaccaggtcgaggggctggctgcggtggcgcag
ctcggcgggctcgagctgcatccctggaattgcgcgcccgacgcctatgacacgccgggc
cggctggtgttcgatctcgatcctgcacccgacgtcgcattcgccgatgtggtcgaggcc
gccaaggagatgcgcgagcggttgacggcggtcggcctcgagagcttctgcaagaccacc
ggcggcaagggcctgcacgtcgtggcgccgttgctgtcgggcggcaaggacaaggtgacg
tggaaggaggccaaggcttttgcgcaagcgatctgccaatggatggagcaggacgatccc
gcgcgctatctgatcaacatgtccaaggccaagcgcacggggaagatctttctcgactat
ctgcgcaacgacaggctctcgaccgcggtcgcggtgctgtcgccgcgggcacgcccgggc
gctacggtgtcgatgccgctgacctggacccaggtccgcggcgacctcgatccgacaaaa
tacacactgcgcagcgtgccggcgctgctcgcgaagtcgaaggcgtgggatggttacgag
gacgcggcgggttcgatcaggtccgcgatcaagaagctcgcggcgcagtag
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