KEGG   Bradyrhizobium genosp. L: IC762_27605
Entry
IC762_27605       CDS       T09261                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgk  Bradyrhizobium genosp. L
Pathway
bgk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IC762_27605 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgk03400]
    IC762_27605 (ligD)
Enzymes [BR:bgk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IC762_27605 (ligD)
DNA repair and recombination proteins [BR:bgk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IC762_27605 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-ProteinID: QPF83444
UniProt: A0A7S9GRQ4
LinkDB
Position
complement(5798659..5801289)
AA seq 876 aa
MPLKNLSTYRKKRDFEKTSEPSGEVKVAPAELRRFVVQKHDATRLHYDFRLEFDGTFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVQLWDRGFWQSDDPERGF
RKGDLKFTLDGEKLHGSWVLVRMKSDRYGGKRTNWLLIKHRDEYAVEGNGEEILAEDRSV
ASGRSMDQIASGKGKAPKPFMLAKGNGKAKADAVWHSNHGLAADERARTKAPAPKAQPKP
KQVAEMPAFVSPQLCAAVDTPPGGAGWCHEIKFDGYRVQLRVEDGEAVLKTRKGLDWTGK
FGAIAKEAGRLPDVLIDGEIVALDKHGTPHFSTLQAALSDGKTDRLVFYAFDLLFEGTND
LRPLPLAERKARLKALLEARKGKNPVIRYVEHFEESGPAVLESARKLKLEGIVSKRLDGA
YRSGRSDDWTKAKIRAGQEVVLGGWKTTNGKFRSLMAGVYRGDHLVFVGIVGTGFGQDTV
RRIMPALKAAASDNSPFGGKDAPKKTRDVHWLKPELVAEIEFGGWTDAGNIRQAAFKGLR
QDKPAHEVEAEMPVATRVVKPMAKSAAKGTASKGAAKSEVMGVVISHPDKALWPDAGDGE
PVTKLDLARYFEAVGEWMMSYLKGRPCSIVRAPDGINGETFFQRHAMAGTSKLLKLAKVA
GDRKPYLQIDQVEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFADVVEA
AKEMRERLTAVGLESFCKTTGGKGLHVVAPLLSGGKDKVTWKEAKAFAQAICQWMEQDDP
ARYLINMSKAKRTGKIFLDYLRNDRLSTAVAVLSPRARPGATVSMPLTWTQVRGDLDPTK
YTLRSVPALLAKSKAWDGYEDAAGSIRSAIKKLAAQ
NT seq 2631 nt   +upstreamnt  +downstreamnt
gtgccgctgaaaaacctgtcgacctaccgcaagaagcgcgatttcgagaagaccagcgag
ccgtccggcgaggtcaaggtggcgccggccgagctgcggcgcttcgtggtccagaagcac
gatgcgacccggctgcactatgatttccggctcgaattcgacggcaccttcaagtcttgg
gcggtgacgcgcgggccctcgctcgatccgcacgacaagcggctcgcggtcgaggtcgag
gaccatccgctcgactacggcgacttcgaaggcaccattcccgaggaccagtatggtggc
ggcacggtgcagctctgggatcgcggcttttggcaatccgacgaccccgagcgcggcttc
aggaagggcgatctgaagttcacgctcgacggcgagaaactgcatggcagctgggtgttg
gtgcggatgaagagcgaccgctatggcggcaagcgcaccaactggctcttgatcaagcat
cgcgacgaatatgccgtggaaggcaacggcgaagagatccttgcagaggaccgctcggtc
gcatccggccgctcgatggatcagatcgcatcgggcaagggcaaggcgccaaagccgttc
atgttggcgaagggcaatggcaaagccaaagccgatgcagtctggcactccaatcacgga
ttggctgcggacgagcgcgccaggaccaaggcaccggcgccgaaagcgcagccgaagccg
aagcaggtcgcggagatgccggcctttgtctcgccacagctctgcgccgccgtcgacacg
ccgcccggcggcgcgggctggtgccacgagatcaaattcgacggctaccgtgtgcagctt
cgcgtcgaggacggcgaagccgtgctgaagacccgcaaggggctcgactggaccgggaaa
ttcggcgcgatcgccaaggaggccggcaggctgccggatgtcctgatcgacggtgagatc
gtcgcgctcgacaagcacggcaccccgcatttctcgacgctgcaggccgcactctccgac
ggcaagaccgaccggctggtgttctacgcgttcgacctgctgttcgagggcaccaatgat
ttgcgtccgctgccgcttgccgaacgcaaggcgcggctgaaggcgttgctcgaggcgcgc
aagggcaaaaacccggtgatccgatatgtcgaacatttcgaggaaagcggcccggcagtg
ctggaatcggcgcgcaagctgaaactcgaaggcatcgtctccaagcggctcgatggcgct
tatcggtctggtcgttccgatgactggaccaaagcaaaaatccgcgccggccaggaggtg
gtgctcggcggctggaaaacgaccaacggcaaattccgctcgctgatggccggcgtctat
cgcggcgatcatctcgtctttgtcggcatcgtcggcaccggattcggccaggacacggtc
cgccgcatcatgccggcgctgaaggcggcggcgtcggacaacagcccgttcggcggcaag
gacgcgccgaagaagacccgcgacgtgcactggctgaagccggagctggtcgccgagatc
gagttcggtggctggaccgatgccggcaatattcgccaggccgcgttcaagggcctgcgt
caggacaagccggcgcacgaggtggaggccgagatgccagtcgcaaccagggtggtgaag
ccgatggcgaagagcgcggcaaaaggcactgcgagcaagggtgcggcaaagagcgaggtg
atgggcgtcgtcatctcgcatccggacaaggcgctgtggcccgacgccggcgacggcgag
ccggtgaccaagctcgatcttgcacgatattttgaggcggtcggcgaatggatgatgtct
tatctcaagggccggccgtgctcgatcgtgcgcgcgcccgacggcatcaacggcgagacc
ttcttccagcgccacgccatggccggtacctcgaagctgttgaagctcgccaaagtggca
ggcgaccgcaaaccctatctacagattgaccaggtcgaggggctggctgcggtggcgcag
ctcggcgggctcgagctgcatccctggaattgcgcgcccgacgcctatgacacgccgggc
cggctggtgttcgatctcgatcctgcacccgacgtcgcattcgccgatgtggtcgaggcc
gccaaggagatgcgcgagcggttgacggcggtcggcctcgagagcttctgcaagaccacc
ggcggcaagggcctgcacgtcgtggcgccgttgctgtcgggcggcaaggacaaggtgacg
tggaaggaggccaaggcttttgcgcaagcgatctgccaatggatggagcaggacgatccc
gcgcgctatctgatcaacatgtccaaggccaagcgcacggggaagatctttctcgactat
ctgcgcaacgacaggctctcgaccgcggtcgcggtgctgtcgccgcgggcacgcccgggc
gctacggtgtcgatgccgctgacctggacccaggtccgcggcgacctcgatccgacaaaa
tacacactgcgcagcgtgccggcgctgctcgcgaagtcgaaggcgtgggatggttacgag
gacgcggcgggttcgatcaggtccgcgatcaagaagctcgcggcgcagtag

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