KEGG   Bordetella genomosp. 13: CAL15_06805
Entry
CAL15_06805       CDS       T05441                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgm  Bordetella genomosp. 13
Pathway
bgm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CAL15_06805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgm03400]
    CAL15_06805
Enzymes [BR:bgm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CAL15_06805
DNA repair and recombination proteins [BR:bgm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CAL15_06805
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ARP94119
UniProt: A0A1W6Z9W8
LinkDB
Position
complement(1529127..1531781)
AA seq 884 aa
MTDSLLTYRGKRDFAATPEPSGRGGARRRRQAAHALTYVVQRHDASTLHYDFRLEWDGVL
VSWAVPKGPSEDTDVKRLAVKVEDHPLDYAGFEGDIPAGHYGAGHVDIWDRGTWQPDEDP
AHALERGSLRFTLQGERLRGAWSLVRMGSEGKQWLLRKLREDAPAKEAGPMSGKRRAHEA
AQTQPEASARRGSSARSEAPTQAKTSSRTTSASQAKSSARTKARARRSDFPAELSPQLAT
LVDQPPRGEGWSYELKYDGYRILCRLEGGKARLLSRTGKDWTRRMAPLARALEALDLPDG
WLDGEVVALDARGMSDFQRLQNTLDGNGKDLRYVVFDLPWWDGEDLRKEPLHARQDRLAG
ILESLPDGTPMQMTQRLQVADHTEGAAALTEACRLSLEGLICKKLDAPYSSTRSASWLKL
KCRPRQEFVIGGYTEPAGSRKHLGALLLGLREGNKLRYAGRVGTGFNAATLRGLAERLEP
LRAARSPFAAPAPADKAQIHWVKPQLVAEVRYAGITTDGLLRQAAFVGLREDKPADEVAD
EVRTTVASIARENTSPAQAAKTKNAAASGKTTSTKAAKTGKKAGSRATSPDAGGNVVRGI
TITHPDRVVFHDPDLTKLDVARYYESVGDLIMPHLQGRRVALLRCPEGTASQCFFQRHLS
PRMPDGVARSGGHLAIESLEGLIGLAQHGVIELHTWGSREPDPDRPDRITLDLDPDANVP
WTQVVEGALHARTLMREVGLEPFLKTTGGKGLHLVAPIRATQSWDVVREFARRLAEQLVA
EMPEKFVATMSKARRHDRIFVDYLRNGDSATAVAAWSLRARNGAPVSMPLDWDDLDPKRD
LRGAAFNLRNALAMARDRADPWRDYAKARRTLGPRMLNRLGEGG
NT seq 2655 nt   +upstreamnt  +downstreamnt
atgacggattccctgctcacttatcgcggcaaacgcgacttcgccgccacgccggagcca
tccgggcgcggcggcgccaggcggcgccgccaggcggctcacgcgttgacgtacgtggtg
cagcgccatgacgccagcaccctgcactatgacttccgcctggaatgggacggcgtgctg
gtgagctgggcggtgcccaagggcccgtccgaagacacggacgtgaagcgccttgcggtg
aaggtcgaggaccaccccctggattacgccggattcgagggagacatcccggccgggcat
tacggcgcgggccacgtggacatctgggatcgcggcacatggcagcccgacgaagacccg
gcccacgcgctggagcgcggcagtctgcgcttcacccttcaaggcgaacggctgcgtggc
gcctggtcgctggtgcgcatgggttcggagggcaagcaatggctgctgcgcaaactgcgc
gaggacgcgccggcgaaggaagcaggacccatgtccggcaagcgccgcgcgcacgaggcg
gcgcagacgcagccggaagcgtccgcacggcgcggatcatccgcgcgctccgaagccccg
acacaggcaaagacctcctcccggacgacgtccgcctcgcaggcgaaatcatcggcgcga
accaaagccagagcacgtcgctcggattttcccgccgaactctcgccccagctggccaca
ctggtggaccagccgccgcggggcgaaggctggtcgtacgaactgaagtacgacggctac
cgcatcctgtgcaggctggaaggcggcaaggcgcggttgctgagccgcaccggcaaggac
tggacgcgccgcatggccccgctggcccgcgcgctggaggcgctggaccttcccgacggc
tggctggacggtgaagtcgtggcgttggacgctcgcggcatgtccgatttccagcgcctg
cagaacacgctggacggtaatggcaaggacctgcgctacgtcgtcttcgacctgccgtgg
tgggacggcgaggatctgcgcaaggaaccgctgcacgcccgccaggaccggctcgccggc
attctggaatcgctgcccgacggcaccccgatgcagatgacccagcgcttgcaggtggcc
gaccacaccgagggcgccgccgcgctcaccgaggcatgccggctgagcctggaaggcctg
atctgcaagaagctcgacgcgccctactcgtccacccgctcggcaagctggctcaagctg
aagtgccggccgcgccaggaattcgtgatcggcggctataccgagcccgccggatcgcgc
aagcatctcggcgccctgctgctgggactgcgcgagggcaacaagctgcgctacgccggc
cgcgtcggcaccggcttcaacgccgccacgctgcgcggcctggccgaacgcctcgagccg
ctgcgcgcggcgcgcagcccgttcgccgcgccggctccagccgacaaggcgcagatccac
tgggtgaaaccgcaactggtggcggaagtgcgctacgccggcattaccaccgacggcctg
ctgcgccaggccgcgttcgtgggcctgcgcgaagacaagccggccgacgaggtggcggac
gaggtgcgcacgacggtggcatcgattgcgcgcgagaatacgtcgcccgcacaggcagcg
aagacgaagaacgccgcagcgtcgggaaagaccacatccacgaaggcagccaagacaggc
aagaaagccgggtcgcgtgccacctcgcccgacgccgggggcaatgtcgtgcgcggcatc
accatcacccatcccgaccgcgtggtgttccacgaccccgacctcaccaagctcgacgtg
gcccgctattacgaatccgtgggcgatctgatcatgccgcatctgcagggccgccgcgtg
gcgctgctgcgctgccccgagggcaccgcttcccaatgcttcttccagcgccacctgagc
ccgcgcatgcccgacggcgttgcccgcagcggcggccacctggccatcgagtcgctggaa
ggactcatcggactggcccagcacggcgtgatcgagctgcacacgtggggctcgcgcgag
cccgatcccgaccggccggaccgcatcaccctggacctggaccccgacgccaatgtgccg
tggacacaggtagtcgaaggcgccctgcacgcgcgcacgctgatgagggaggtcggcctg
gagcctttcctgaagaccacgggcggcaagggtctgcacctggtcgccccgatccgcgct
acccagtcgtgggacgtggtgcgcgagttcgcacgccgcctggccgaacaactggtggcg
gaaatgccggagaagttcgtggcgacgatgtccaaggcccgccgtcacgaccgcatcttc
gtggactatctgcgcaacggcgattccgccacggcggtcgcggcctggtcgctgcgcgcg
cgcaatggcgcgccggtctcgatgccgttggactgggacgacctggatccgaagcgcgac
ctgcgcggcgcggccttcaatctgcgcaatgcgttggccatggctcgcgaccgggccgat
ccatggcgcgattacgcgaaggcgcgccgcacgctggggccgcgcatgttgaatcgcctg
ggcgaaggcggctga

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