Bordetella genomosp. 13: CAL15_06805
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Entry
CAL15_06805 CDS
T05441
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgm
Bordetella genomosp. 13
Pathway
bgm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAL15_06805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgm03400
]
CAL15_06805
Enzymes [BR:
bgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAL15_06805
DNA repair and recombination proteins [BR:
bgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAL15_06805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ARP94119
UniProt:
A0A1W6Z9W8
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All DBs
Position
complement(1529127..1531781)
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AA seq
884 aa
AA seq
DB search
MTDSLLTYRGKRDFAATPEPSGRGGARRRRQAAHALTYVVQRHDASTLHYDFRLEWDGVL
VSWAVPKGPSEDTDVKRLAVKVEDHPLDYAGFEGDIPAGHYGAGHVDIWDRGTWQPDEDP
AHALERGSLRFTLQGERLRGAWSLVRMGSEGKQWLLRKLREDAPAKEAGPMSGKRRAHEA
AQTQPEASARRGSSARSEAPTQAKTSSRTTSASQAKSSARTKARARRSDFPAELSPQLAT
LVDQPPRGEGWSYELKYDGYRILCRLEGGKARLLSRTGKDWTRRMAPLARALEALDLPDG
WLDGEVVALDARGMSDFQRLQNTLDGNGKDLRYVVFDLPWWDGEDLRKEPLHARQDRLAG
ILESLPDGTPMQMTQRLQVADHTEGAAALTEACRLSLEGLICKKLDAPYSSTRSASWLKL
KCRPRQEFVIGGYTEPAGSRKHLGALLLGLREGNKLRYAGRVGTGFNAATLRGLAERLEP
LRAARSPFAAPAPADKAQIHWVKPQLVAEVRYAGITTDGLLRQAAFVGLREDKPADEVAD
EVRTTVASIARENTSPAQAAKTKNAAASGKTTSTKAAKTGKKAGSRATSPDAGGNVVRGI
TITHPDRVVFHDPDLTKLDVARYYESVGDLIMPHLQGRRVALLRCPEGTASQCFFQRHLS
PRMPDGVARSGGHLAIESLEGLIGLAQHGVIELHTWGSREPDPDRPDRITLDLDPDANVP
WTQVVEGALHARTLMREVGLEPFLKTTGGKGLHLVAPIRATQSWDVVREFARRLAEQLVA
EMPEKFVATMSKARRHDRIFVDYLRNGDSATAVAAWSLRARNGAPVSMPLDWDDLDPKRD
LRGAAFNLRNALAMARDRADPWRDYAKARRTLGPRMLNRLGEGG
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgacggattccctgctcacttatcgcggcaaacgcgacttcgccgccacgccggagcca
tccgggcgcggcggcgccaggcggcgccgccaggcggctcacgcgttgacgtacgtggtg
cagcgccatgacgccagcaccctgcactatgacttccgcctggaatgggacggcgtgctg
gtgagctgggcggtgcccaagggcccgtccgaagacacggacgtgaagcgccttgcggtg
aaggtcgaggaccaccccctggattacgccggattcgagggagacatcccggccgggcat
tacggcgcgggccacgtggacatctgggatcgcggcacatggcagcccgacgaagacccg
gcccacgcgctggagcgcggcagtctgcgcttcacccttcaaggcgaacggctgcgtggc
gcctggtcgctggtgcgcatgggttcggagggcaagcaatggctgctgcgcaaactgcgc
gaggacgcgccggcgaaggaagcaggacccatgtccggcaagcgccgcgcgcacgaggcg
gcgcagacgcagccggaagcgtccgcacggcgcggatcatccgcgcgctccgaagccccg
acacaggcaaagacctcctcccggacgacgtccgcctcgcaggcgaaatcatcggcgcga
accaaagccagagcacgtcgctcggattttcccgccgaactctcgccccagctggccaca
ctggtggaccagccgccgcggggcgaaggctggtcgtacgaactgaagtacgacggctac
cgcatcctgtgcaggctggaaggcggcaaggcgcggttgctgagccgcaccggcaaggac
tggacgcgccgcatggccccgctggcccgcgcgctggaggcgctggaccttcccgacggc
tggctggacggtgaagtcgtggcgttggacgctcgcggcatgtccgatttccagcgcctg
cagaacacgctggacggtaatggcaaggacctgcgctacgtcgtcttcgacctgccgtgg
tgggacggcgaggatctgcgcaaggaaccgctgcacgcccgccaggaccggctcgccggc
attctggaatcgctgcccgacggcaccccgatgcagatgacccagcgcttgcaggtggcc
gaccacaccgagggcgccgccgcgctcaccgaggcatgccggctgagcctggaaggcctg
atctgcaagaagctcgacgcgccctactcgtccacccgctcggcaagctggctcaagctg
aagtgccggccgcgccaggaattcgtgatcggcggctataccgagcccgccggatcgcgc
aagcatctcggcgccctgctgctgggactgcgcgagggcaacaagctgcgctacgccggc
cgcgtcggcaccggcttcaacgccgccacgctgcgcggcctggccgaacgcctcgagccg
ctgcgcgcggcgcgcagcccgttcgccgcgccggctccagccgacaaggcgcagatccac
tgggtgaaaccgcaactggtggcggaagtgcgctacgccggcattaccaccgacggcctg
ctgcgccaggccgcgttcgtgggcctgcgcgaagacaagccggccgacgaggtggcggac
gaggtgcgcacgacggtggcatcgattgcgcgcgagaatacgtcgcccgcacaggcagcg
aagacgaagaacgccgcagcgtcgggaaagaccacatccacgaaggcagccaagacaggc
aagaaagccgggtcgcgtgccacctcgcccgacgccgggggcaatgtcgtgcgcggcatc
accatcacccatcccgaccgcgtggtgttccacgaccccgacctcaccaagctcgacgtg
gcccgctattacgaatccgtgggcgatctgatcatgccgcatctgcagggccgccgcgtg
gcgctgctgcgctgccccgagggcaccgcttcccaatgcttcttccagcgccacctgagc
ccgcgcatgcccgacggcgttgcccgcagcggcggccacctggccatcgagtcgctggaa
ggactcatcggactggcccagcacggcgtgatcgagctgcacacgtggggctcgcgcgag
cccgatcccgaccggccggaccgcatcaccctggacctggaccccgacgccaatgtgccg
tggacacaggtagtcgaaggcgccctgcacgcgcgcacgctgatgagggaggtcggcctg
gagcctttcctgaagaccacgggcggcaagggtctgcacctggtcgccccgatccgcgct
acccagtcgtgggacgtggtgcgcgagttcgcacgccgcctggccgaacaactggtggcg
gaaatgccggagaagttcgtggcgacgatgtccaaggcccgccgtcacgaccgcatcttc
gtggactatctgcgcaacggcgattccgccacggcggtcgcggcctggtcgctgcgcgcg
cgcaatggcgcgccggtctcgatgccgttggactgggacgacctggatccgaagcgcgac
ctgcgcggcgcggccttcaatctgcgcaatgcgttggccatggctcgcgaccgggccgat
ccatggcgcgattacgcgaaggcgcgccgcacgctggggccgcgcatgttgaatcgcctg
ggcgaaggcggctga
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