Burkholderia gladioli ATCC 10248: BM43_2577
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Entry
BM43_2577 CDS
T03826
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgo
Burkholderia gladioli ATCC 10248
Pathway
bgo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BM43_2577 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgo03400
]
BM43_2577 (ligD)
Enzymes [BR:
bgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BM43_2577 (ligD)
DNA repair and recombination proteins [BR:
bgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BM43_2577 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJW99862
LinkDB
All DBs
Position
1:2813883..2816549
Genome browser
AA seq
888 aa
AA seq
DB search
MASKLAEYQRKRRFDASPEPAGKRGAQARPRHDPERELHFVVQEHHARRLHYDFRLELDG
VLKSWAVPKGPSTEPAEKRLAVHVEDHPLDYAGFEGEIPPGHYGAGSVRIDDQGVWRPDG
GIAGARRGYREGKLSFELDGHRLHGRWSLVRTHLPERNGKSSWLLIKARDEQAGSPGGER
IKAARKQPATAAAKRAGERAETHGEKHAEKHAEKRGAPPPRGKRAADRAGRREALPATLA
PQLATLVAAPPEGEDWRYEMKFDGYRVLIRIAGRGRRRSVQVFTREGKDWSAKFRRQCAA
LADLPVNNAWLDAEAVVLDARGLPDFGALQQALSAGEDAAIVFFVFDLPFLDGRALADLP
LDTRRERLAACFGGAGRQAVQLSPTLEGEPAELLAAASRAGLEGLIGKRADSPYRAGRSA
SWIKLKCRQRQEFVIGGFSEPRGSRSGFGALLLGVHERPAQGRRRAGGLAYVGRVGTGFD
RRALDAIAARLRKIERSDAPFAVPPAERGDAVHWVEPRLVAECEFAGWTADGLVRQAAFI
GLREDKPAGQIVRETAAPAGGQPTGGRMRTDHQATGSRSRGKAANHATGRNDDATVAGVR
VTHPERVVDTESGLRKIDVVRYYAAIAEHLLPQLAGRPVSLVRYMKGIDGPSFFQKHAGP
RGMGFVTRHPGLDPGHDALITLDDREALVGAAQFDALEFHTWNACVDRIERPDRLVFDLD
PDPALPWRAMIEAAQALRALLDALGLPCFCKTSGGKGLHLVVPITRHASWDQARDFSQAV
AQHLAGVAPERFSAKMGAQNRKGRIFVDYLRNGRGASTVAAWSARARPGMGVSVPIDWDE
LPGTRGGAQWTIAEVPQRLASLRRDPWDGYEAARRRLTAAMRERLGKL
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaagctcgccgaataccagcgcaaacgccgcttcgacgcgagcccggaaccg
gccggcaagcgcggcgcccaggcgcgcccgcgccacgatcccgagcgcgagctgcacttc
gtggtgcaggagcatcacgcgcggcgcctgcattacgacttccgcctcgaactcgacggc
gtgctgaagtcctgggcggtgccgaaggggccgagcaccgaaccggccgagaagcggctc
gcggtgcatgtcgaggatcacccgctcgactatgccggcttcgagggcgagataccgccc
ggccactacggcgcgggcagcgtgcgcatcgacgaccagggcgtctggcggcccgatggc
ggtatcgccggcgcgcggcgcggctatcgcgagggcaagctcagtttcgaactcgatggc
catcgtctgcatggacgctggtcgctggtgcgcacgcaccttcccgagcgcaacggcaag
tcgtcgtggctgctgatcaaggcgcgcgacgagcaggcgggctcgccgggcggcgagcgc
atcaaggccgcgcgcaagcagccggccacggcggcggccaagcgtgccggcgagcgtgcc
gaaacgcatggcgagaagcatgcagagaagcatgccgagaagcgcggcgcaccaccgcca
cgcggcaagcgcgcggcggatcgcgccggccggcgcgaggcgctgccggccacgctcgcg
ccgcaattggcgacgctcgtggccgcgccgcccgagggcgaggactggcgctacgagatg
aagttcgacggctatcgcgtgctgatccgcattgccggccgcggccgccgacgctcggtg
caggtgttcacgcgcgagggcaaggactggagcgcgaaattccgccggcaatgcgccgcg
ctcgccgacctgccggtgaacaacgcctggctggacgccgaggccgtggtgctcgacgcg
cgcggcctgcccgatttcggggccctgcagcaggcgctgtcggccggcgaggacgccgcc
atcgtgttcttcgtgttcgacctgccctttctcgatggccgggcgctggccgacctgcca
ctcgatacgcgccgcgagcggctggcggcctgcttcggcggcgcgggcaggcaagccgtg
cagctttcgccgacgctcgagggcgagccggccgagctgctcgccgcggcgtcacgggcc
ggcctcgaaggcctgatcggcaagcgcgccgacagcccttatcgcgccgggcgcagcgcg
tcgtggatcaagctgaagtgccgacagcgccaggaattcgtgatcggcggcttcagcgag
ccgcgcggcagccgcagcggattcggcgcgctgctgctcggcgtgcacgagcggcccgcg
caagggcgtcgccgtgccggcggcctggcttatgtcggccgcgtcggcaccggattcgat
cggcgcgcgctcgacgcgatcgcggccaggctgcgaaagatcgaacgcagcgacgcgccg
ttcgcggtgccgccggccgaacgcggcgacgcggtgcactgggtcgagccgcggctggtg
gccgaatgcgagttcgcgggctggaccgccgacggcctggtccggcaggctgccttcatc
ggcttgcgcgaggacaagccggccgggcagatcgtcagggaaacggccgcgcccgccggc
gggcaaccgacaggaggcaggatgaggaccgatcatcaggcgacgggctcgcgctcgcgc
ggcaaggccgcgaaccacgccaccggcaggaacgacgacgccacggtggcgggtgtgcgc
gtcacgcatcccgagcgcgtggtcgataccgagagcggcctgcgcaagatcgacgtggtc
cgctattacgccgcgatcgccgagcacctgctgccgcagctcgcgggacggccggtgtcg
ctggtgcgctacatgaagggcatcgacgggccgtctttcttccagaagcacgcgggcccg
cgcggcatgggtttcgtcacgcgccaccccggcctcgatcccgggcacgacgcgctgatc
acgctcgacgatcgcgaggccctggtcggcgccgcgcagttcgacgccctcgaattccac
acctggaatgcctgcgtggaccggatcgagcggcccgaccggctggtgttcgacctcgat
cccgacccggccttgccgtggcgcgcgatgatcgaggcggcccaggcgctgcgcgcgctg
ctcgacgcgctggggctgccgtgcttctgcaagaccagcggcggcaagggcctgcacctg
gtggtgccgatcacgcgccacgcttcctgggaccaggcgcgcgatttctcgcaggcggtg
gcgcagcacctggccggcgtcgcgccggagcgtttctcggcgaagatgggcgcgcagaac
cgcaagggccgcatcttcgtcgactacctgcgcaacgggcgcggcgccagcacggtggcg
gcctggtcggcgcgggcgcggccggggatgggcgtgtcggtgccgatcgattgggatgaa
ctgcccggtacccgcggcggcgcgcaatggaccatcgccgaggtgccgcagcggctggcc
tcgctgcggcgcgatccctgggacggctacgaggcggcgcgccggcggctcaccgcggcc
atgcgcgagcgcctgggcaagctctga
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