KEGG   Brevundimonas goettingensis: IFJ75_16270
Entry
IFJ75_16270       CDS       T07668                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgoe  Brevundimonas goettingensis
Pathway
bgoe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgoe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IFJ75_16270 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgoe03400]
    IFJ75_16270 (ligD)
Enzymes [BR:bgoe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IFJ75_16270 (ligD)
DNA repair and recombination proteins [BR:bgoe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IFJ75_16270 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QTC93381
UniProt: A0A975C925
LinkDB
Position
complement(3315135..3317681)
AA seq 848 aa
MLGELKTYKAKRDFAATPEPAGKKGKGGQTGGRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDHTVKRLAVEVEDHPLDYGSFEGTIPGGNYGAGTVQMWDTGTWAPQEPDLEAA
FKRGQIKMILDGERLKGKWALIRLRSDRGKPSKRNNWLLIKEIDEYTVDGEGDANMEIDA
SVTTGRTMAEIAEGKTQWTSSKPTGRKAPPKPKATTAQASHATRPHAFVPIQLCKIADYP
PSAAGWAHEIKFDGYRLQVATGGGRATIRTRKGLDWTDRFPELAADAAKWPDAVIDGELC
ALTEDASPDFSALQAAISDGDTGGLIYFAFDLLFEGGEDLRTLPLSHRKARLQAVLDRLP
KAAAKRIRFVDHFASSGKAVLESACRMDLEGVISKRLDAPYSAGRSNSWVKSKCRGRDEV
VIGGWTSEGDRFRSLIVGVHDGKKGLRPLGRVGTGYGEPLLKTLLPALKKAAADRSPFAG
ATPRKTGGETIHWLKPVLVAEIEHGGYTDSGSLRQAAFKGLRDDKTAPEVDTAPQTPVKT
SPKPAAAKPGKLVVAGITISHPDKVLWPAHDGADPITKADLVAYYETVAERLLPHVADRP
TSIIRAPEGIEGEQFFQRHAMPGSNPRLKLIDVHERKPYVAVVDVGGLVAIGQSGGLELH
PWGCAPGDPETPEQITFDLDPDVGLDFADVISAAKVVKAKLETLGLNPFVKTTGGKGLHV
VVPIKSDARSAVTWEQNKAFAKAVSEAMRVEAPDRFTTTLAKKARGGKIFLDYLRNGRMA
TAVAPWSPRARPGAGIAFPLNWGQVKAGLDPKAFNIRTAPALLKKADPWKDFRDGAVSLQ
PALKKMGL
NT seq 2547 nt   +upstreamnt  +downstreamnt
atgctgggcgaactgaagacctataaggcgaagcgggacttcgcggcgacgccggagccg
gcggggaagaagggcaagggcggccagaccggcggccgttatctgatccagcgccacgcc
gcgacgcggctgcactatgatttccgcatcgaggcggacggggtgctcaagtcctgggcg
gtgaccaaggcgccgtcgcgggatcacaccgtcaaacgcctcgccgtcgaggtcgaggat
catccgctcgactatggatcgttcgaggggaccattcccggcggcaactatggcgcgggc
acggtgcagatgtgggacaccggaacctgggcgccgcaggagccggacctcgaggccgcc
ttcaagcgcggccagatcaagatgatcctcgacggcgagcggctgaagggcaaatgggcc
ctgatccggcttcggtccgatcgcggcaaaccgtccaaacggaacaactggctgctgatc
aaggagatcgacgaatacacggtcgacggggagggcgacgccaatatggagatcgacgcc
tcggtcacgaccggccggacgatggccgagatcgccgagggcaagacgcaatggacatcg
tcgaaacccaccggccgcaaggcgccgccgaaaccgaaggcgacgacggcccaggcctcg
cacgcgacccggccgcacgccttcgtccccatccagctgtgcaagatcgccgactatccg
ccctcggccgccggctgggcgcatgagatcaagttcgacggctatcggctgcaggtcgcg
accggcggcgggcgggcgacgatccggacgcgcaaggggctggactggaccgaccgcttc
cccgaactggccgccgacgccgcgaaatggcccgacgccgtgatcgacggcgagctctgc
gccctgacggaggacgccagccccgacttctcggcgctgcaggcggccatctcggacggc
gacaccggcggcctgatctatttcgccttcgaccttctgttcgagggcggcgaggatctg
cggaccctgcccctgtcgcaccgcaaggcgcggctgcaggcggtgctcgaccggctgccc
aaggcggcggcgaagcggatccgcttcgtcgatcacttcgcctccagcggcaaggcggtg
ctggaaagcgcctgccggatggacctcgaaggcgtcatctccaaacgcctggacgccccc
tattccgcggggcgctccaacagttgggtcaagtcgaaatgccggggccgggacgaggtg
gtcatcggcggctggacgtccgaaggcgaccgcttccgctccctgatcgtcggcgtccat
gacggcaagaaaggtctgcgccccctcggccgggtcggcacgggctatggcgagcccttg
ctgaagacgcttctgcccgccctgaaaaaggccgccgccgaccgcagccccttcgcgggc
gcgaccccgaggaagaccggcggcgagaccatccactggctcaagcccgtcctcgtcgcc
gagatcgaacacggcggatacaccgacagcggctccctccggcaggccgccttcaagggc
ctgcgcgacgacaagaccgcgccagaggtcgacacggcgccccagaccccggtgaagacc
agcccgaagcccgccgccgccaaacccggcaagctggtcgtcgccgggatcaccatctcc
caccccgacaaggtgctgtggcccgcccatgacggcgccgatccgatcaccaaggccgat
ctcgtcgcctactatgagaccgtcgccgagcgtttgctgccccatgtcgccgatcggccg
acctcgatcatccgcgcgcccgaggggatcgagggcgagcaattcttccagcgccacgcc
atgcccggctccaacccgcggctgaagctgatcgacgtgcatgagcgcaagccctatgtc
gccgtcgtcgacgtcggcggtctggtcgccatcggccagtcgggcgggctggagctgcat
ccctggggctgcgcgcccggcgatccggagacgccggaacagatcaccttcgacctcgat
ccggatgtcgggctggacttcgccgacgtgatttcggcggctaaggtagtgaaggcgaaa
ctcgaaaccctcggtctcaaccccttcgtcaagacgaccggcggcaaggggcttcacgtc
gtcgttccaatcaagtctgacgcccgctcggctgtgacctgggagcagaacaaggccttc
gccaaggcggtctccgaggccatgcgcgtcgaggcgcccgaccgcttcaccaccaccctc
gccaagaaggcgcggggcgggaagatcttcctcgactatctgaggaacggccggatggcg
acggcggtagccccctggtcgccccgcgcccgcccgggcgccggcatcgccttccccctg
aactggggtcaggtgaaggccgggctggatccgaaggccttcaatatccgcaccgccccg
gccctgttgaagaaggccgatccgtggaaggacttccgcgacggcgcggtcagcctgcaa
ccggcgctcaaaaagatgggcctctaa

DBGET integrated database retrieval system