Brevundimonas goettingensis: IFJ75_16270
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Entry
IFJ75_16270 CDS
T07668
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgoe
Brevundimonas goettingensis
Pathway
bgoe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IFJ75_16270 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgoe03400
]
IFJ75_16270 (ligD)
Enzymes [BR:
bgoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IFJ75_16270 (ligD)
DNA repair and recombination proteins [BR:
bgoe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IFJ75_16270 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTC93381
UniProt:
A0A975C925
LinkDB
All DBs
Position
complement(3315135..3317681)
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AA seq
848 aa
AA seq
DB search
MLGELKTYKAKRDFAATPEPAGKKGKGGQTGGRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDHTVKRLAVEVEDHPLDYGSFEGTIPGGNYGAGTVQMWDTGTWAPQEPDLEAA
FKRGQIKMILDGERLKGKWALIRLRSDRGKPSKRNNWLLIKEIDEYTVDGEGDANMEIDA
SVTTGRTMAEIAEGKTQWTSSKPTGRKAPPKPKATTAQASHATRPHAFVPIQLCKIADYP
PSAAGWAHEIKFDGYRLQVATGGGRATIRTRKGLDWTDRFPELAADAAKWPDAVIDGELC
ALTEDASPDFSALQAAISDGDTGGLIYFAFDLLFEGGEDLRTLPLSHRKARLQAVLDRLP
KAAAKRIRFVDHFASSGKAVLESACRMDLEGVISKRLDAPYSAGRSNSWVKSKCRGRDEV
VIGGWTSEGDRFRSLIVGVHDGKKGLRPLGRVGTGYGEPLLKTLLPALKKAAADRSPFAG
ATPRKTGGETIHWLKPVLVAEIEHGGYTDSGSLRQAAFKGLRDDKTAPEVDTAPQTPVKT
SPKPAAAKPGKLVVAGITISHPDKVLWPAHDGADPITKADLVAYYETVAERLLPHVADRP
TSIIRAPEGIEGEQFFQRHAMPGSNPRLKLIDVHERKPYVAVVDVGGLVAIGQSGGLELH
PWGCAPGDPETPEQITFDLDPDVGLDFADVISAAKVVKAKLETLGLNPFVKTTGGKGLHV
VVPIKSDARSAVTWEQNKAFAKAVSEAMRVEAPDRFTTTLAKKARGGKIFLDYLRNGRMA
TAVAPWSPRARPGAGIAFPLNWGQVKAGLDPKAFNIRTAPALLKKADPWKDFRDGAVSLQ
PALKKMGL
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgaactgaagacctataaggcgaagcgggacttcgcggcgacgccggagccg
gcggggaagaagggcaagggcggccagaccggcggccgttatctgatccagcgccacgcc
gcgacgcggctgcactatgatttccgcatcgaggcggacggggtgctcaagtcctgggcg
gtgaccaaggcgccgtcgcgggatcacaccgtcaaacgcctcgccgtcgaggtcgaggat
catccgctcgactatggatcgttcgaggggaccattcccggcggcaactatggcgcgggc
acggtgcagatgtgggacaccggaacctgggcgccgcaggagccggacctcgaggccgcc
ttcaagcgcggccagatcaagatgatcctcgacggcgagcggctgaagggcaaatgggcc
ctgatccggcttcggtccgatcgcggcaaaccgtccaaacggaacaactggctgctgatc
aaggagatcgacgaatacacggtcgacggggagggcgacgccaatatggagatcgacgcc
tcggtcacgaccggccggacgatggccgagatcgccgagggcaagacgcaatggacatcg
tcgaaacccaccggccgcaaggcgccgccgaaaccgaaggcgacgacggcccaggcctcg
cacgcgacccggccgcacgccttcgtccccatccagctgtgcaagatcgccgactatccg
ccctcggccgccggctgggcgcatgagatcaagttcgacggctatcggctgcaggtcgcg
accggcggcgggcgggcgacgatccggacgcgcaaggggctggactggaccgaccgcttc
cccgaactggccgccgacgccgcgaaatggcccgacgccgtgatcgacggcgagctctgc
gccctgacggaggacgccagccccgacttctcggcgctgcaggcggccatctcggacggc
gacaccggcggcctgatctatttcgccttcgaccttctgttcgagggcggcgaggatctg
cggaccctgcccctgtcgcaccgcaaggcgcggctgcaggcggtgctcgaccggctgccc
aaggcggcggcgaagcggatccgcttcgtcgatcacttcgcctccagcggcaaggcggtg
ctggaaagcgcctgccggatggacctcgaaggcgtcatctccaaacgcctggacgccccc
tattccgcggggcgctccaacagttgggtcaagtcgaaatgccggggccgggacgaggtg
gtcatcggcggctggacgtccgaaggcgaccgcttccgctccctgatcgtcggcgtccat
gacggcaagaaaggtctgcgccccctcggccgggtcggcacgggctatggcgagcccttg
ctgaagacgcttctgcccgccctgaaaaaggccgccgccgaccgcagccccttcgcgggc
gcgaccccgaggaagaccggcggcgagaccatccactggctcaagcccgtcctcgtcgcc
gagatcgaacacggcggatacaccgacagcggctccctccggcaggccgccttcaagggc
ctgcgcgacgacaagaccgcgccagaggtcgacacggcgccccagaccccggtgaagacc
agcccgaagcccgccgccgccaaacccggcaagctggtcgtcgccgggatcaccatctcc
caccccgacaaggtgctgtggcccgcccatgacggcgccgatccgatcaccaaggccgat
ctcgtcgcctactatgagaccgtcgccgagcgtttgctgccccatgtcgccgatcggccg
acctcgatcatccgcgcgcccgaggggatcgagggcgagcaattcttccagcgccacgcc
atgcccggctccaacccgcggctgaagctgatcgacgtgcatgagcgcaagccctatgtc
gccgtcgtcgacgtcggcggtctggtcgccatcggccagtcgggcgggctggagctgcat
ccctggggctgcgcgcccggcgatccggagacgccggaacagatcaccttcgacctcgat
ccggatgtcgggctggacttcgccgacgtgatttcggcggctaaggtagtgaaggcgaaa
ctcgaaaccctcggtctcaaccccttcgtcaagacgaccggcggcaaggggcttcacgtc
gtcgttccaatcaagtctgacgcccgctcggctgtgacctgggagcagaacaaggccttc
gccaaggcggtctccgaggccatgcgcgtcgaggcgcccgaccgcttcaccaccaccctc
gccaagaaggcgcggggcgggaagatcttcctcgactatctgaggaacggccggatggcg
acggcggtagccccctggtcgccccgcgcccgcccgggcgccggcatcgccttccccctg
aactggggtcaggtgaaggccgggctggatccgaaggccttcaatatccgcaccgccccg
gccctgttgaagaaggccgatccgtggaaggacttccgcgacggcgcggtcagcctgcaa
ccggcgctcaaaaagatgggcctctaa
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