Burkholderia plantarii PG1: BGL_1c11440
Help
Entry
BGL_1c11440 CDS
T03632
Name
(GenBank) DNA primase, small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgp
Burkholderia plantarii PG1
Pathway
bgp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BGL_1c11440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgp03400
]
BGL_1c11440
Enzymes [BR:
bgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BGL_1c11440
DNA repair and recombination proteins [BR:
bgp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BGL_1c11440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Keratin_B2
Motif
Other DBs
NCBI-ProteinID:
AJK45666
UniProt:
A0A0B6S0A2
LinkDB
All DBs
Position
1:1301574..1304489
Genome browser
AA seq
971 aa
AA seq
DB search
MADPLSEYQRRRRFDATPEPAGAKRRRGAAGPLHFVVQEHHARRLHYDFRLELDGVLKSW
AVPKGPSLDPADKRLAVHVEDHPLDYAGFEGEIPPGHYGAGSVRIDDHGVWRPDGGVAGA
RRGYRDGKLTFELDGTKLRGRWSLICTAMPGAGGKSSWLLVKARDDAAGDVPADEPATRR
RIRHGKAAAKRAATKPAATKPAATKPAATKPAATKPAATKPAATKPAATKPAATKPAATK
PAATKPAATKPAATKPAATKPAATKPAATKPAATKSTATKSTATKSRTRSDLPGARRAAL
PDTLAPQLATLVAVPPEDEGWRYEMKFDGYRVLIRIAGRGRRRTVRMLTREGLDWSAKFG
AQCAAFAALPVDNAWLDAEAVVLDARGVPDFSALQQALSDGDDAAIVCFVFDLLHLDGRA
LQAVPLEARRERLAALLADSDSGCLRFSPTLDGPPAALLEAAAQAGLEGLIGKRADGAYR
AGRGSQWIKLKCRQRQEFVIGGYSAPRGSRSHFGALLLGVHAAPDGARRRGRHGAREPRA
LQYVGRVGTGFDARQLAALAKRLAALECERAPFAVPPPSRGDAVRWVEPTLVAECEFAGW
TADGLVRQAAFVALRDDKPAARIVRETAVPTAGQTTGTRMATTEPVTAGNARRGHRAGAN
EPTKATKATKATKAADSTVAGVRITHPERMVDPDGGFRKIDVVRYYASVARWLLPQLSGR
PVSLVRYMKGVGGESFFQKHAGERGMGFVTRHPGLDPGHDALMTLDDTAALVGAAQFDAL
EFHTWNATVDRIERPERLVFDLDPDPALPWERMIEAAGLVRALLDALGLPAFCKTSGGKG
LHLVVPITRHTEWDDAKAFSQAVARHLAGQLPDRFTAKMGPENRKGLIFVDYLRNGRGAS
TVAAYSARARPGMGVSVPLTWEEVAATTGGAQWTIANLPARLDTQRADPWEDYDAARTRI
TAAMRRRLGKL
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccccctttccgaataccagcgcaggcgccgcttcgacgcgacgcccgagccg
gcgggcgcgaagcggcggcgtggcgcggccgggccgctgcatttcgtggtgcaggagcat
cacgcgcggcgcctgcattacgacttccgtctcgaactggacggcgtgctgaaatcgtgg
gccgtgccgaaaggcccgagcctcgatccggccgacaagcggctcgccgtccacgtcgag
gaccatccgctcgactacgcgggtttcgagggcgagattccgcccggccactacggcgcg
ggtagcgtgcggatcgacgaccacggcgtctggcggcccgacggcggcgtggcgggcgca
cggcgcggctatcgcgacggcaagctcacgttcgaactcgacggcacgaagctgcggggg
cgctggtcgctgatctgcaccgcgatgccgggagccgggggcaagtcgtcgtggctgctc
gtgaaggcgcgcgacgacgcggccggcgacgtaccggcggacgaacccgccacgcgacga
cgcatccggcacggcaaggcggcggcgaagcgagccgccacgaaaccggccgccacgaaa
ccggccgccacgaaaccggccgccacgaaaccggccgccacgaaaccggccgccacgaaa
ccggccgccacgaaaccggccgccacgaaaccggccgccacgaaaccggccgccacgaaa
ccggccgccacgaaaccggccgccacgaaaccggccgccacgaaaccggccgccacgaaa
ccggccgccacgaaaccggccgccacgaaaccggccgccacgaaatcgacggcaacgaaa
tcgacggcaacgaaatcgcgcacccgaagcgatcttcccggcgcgcgccgcgccgcgttg
ccggacacgctcgcgccgcagctcgcgacgctcgtcgccgtgccgcccgaggacgagggc
tggcgctacgagatgaagttcgacggctaccgcgtgctgatccgcatcgccggtcgcggc
aggcgccgcacggtgcgcatgctgacgcgcgagggcctcgactggagcgcgaagtttggc
gcgcagtgcgcggcgttcgcggcgctgccggtcgacaacgcctggctcgacgccgaggcc
gtcgtgctcgacgcgcgcggcgtccccgatttttcggcgctgcagcaggcgctgtccgac
ggcgacgacgcggcgatcgtctgcttcgtgttcgacctgctgcatctggacggccgcgcg
ctgcaggccgtgccgctcgaggcgcgccgcgagcggctcgccgcgctgctggcggattcc
gattccggctgcctgcggttctcgccgacgctcgacggcccgccggcggcgctgctcgag
gccgccgcgcaagccggactcgaaggcctgatcggcaagcgcgccgacggcgcctaccgc
gccggacgcggcagccaatggatcaagctcaaatgccggcagcgccaggagttcgtgatc
ggcggctacagcgccccgcgcggcagccgcagccacttcggcgcgctgctgctcggcgtc
cacgcggcgccggacggcgcgcggcggcgtggccgccacggcgcgcgcgagccgcgcgcc
ctgcagtacgtcggccgcgtcggcaccggcttcgacgccaggcagctcgccgcgctggcg
aagcggctcgcggcgctcgaatgcgaacgcgcgccgttcgccgtgccgccgccttcacgc
ggcgacgcggtacgctgggtcgagccgacgctcgtcgccgaatgcgagttcgcgggctgg
accgccgacgggctggtgcggcaggcggcgttcgtcgcgctgcgcgacgacaagccggcc
gcgcgcatcgtcagggaaaccgccgtgccgacggcagggcaaaccacgggaaccaggatg
gccacgaccgaacccgtcacggccggcaacgccaggcgcggccatcgcgccggggcgaac
gagccgacgaaggcaacgaaggcaacgaaggcaacgaaagccgcggactcgaccgtggcg
ggcgtgcgcatcacgcatccggagcgcatggtcgatccggacggcggctttcgcaagatc
gacgtggtgcgctactacgcgtcggtcgcgcgctggctgctgccgcaactgagcgggcgg
cccgtgtcgctggtgcgctacatgaagggcgtcggcggcgaatcgttcttccagaagcac
gcgggcgagcgcggcatgggcttcgtcacgcgccacccggggctcgatcccggccacgac
gcgctgatgacgctcgacgacaccgccgcgctggtgggcgccgcgcagttcgacgcgctc
gaattccacacctggaacgcgacggtggaccggatcgagcggcccgagcgcctggtgttc
gacctcgatcccgatccggcgctgccgtgggagcggatgatcgaggcggccggcctggtg
cgcgcgctgctcgacgcactcgggctgcccgcgttctgcaagaccagcggcggcaagggg
ctgcacctggtggtgccgatcacgcggcatacggaatgggacgacgcgaaggcgttctcg
caggcggtggcgcggcatctggccgggcagctgccggaccgcttcaccgcgaagatgggg
ccggagaaccgcaagggcctgatcttcgtcgactacctgcgcaacgggcgcggcgcgagc
acggtagccgcctattcggcgcgcgcgcggcccgggatgggcgtatcggtgccgctcacc
tgggaggaggtggccgccaccacgggcggtgcgcagtggacgatcgccaacctgccggcg
cggctcgacacgcagcgggccgacccgtgggaggattacgatgccgcgcgcacgcgcatc
acggcggcgatgcgccggcgcctcggcaagctctga
DBGET
integrated database retrieval system
