KEGG   Bradyrhizobium guangdongense: X265_09370
Entry
X265_09370        CDS       T05902                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgq  Bradyrhizobium guangdongense
Pathway
bgq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    X265_09370 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgq03400]
    X265_09370 (ligD)
Enzymes [BR:bgq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     X265_09370 (ligD)
DNA repair and recombination proteins [BR:bgq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     X265_09370 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QAU37866
UniProt: A0A410V2J5
LinkDB
Position
1931936..1934608
AA seq 890 aa
MLQKLSTYRKKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWEAEDPEAGFR
KGDLKFTLHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEYASEDQDILGEDKSVASGR
AMEQIAEGKGRAPKPFMLAKGTGKADAVWQSNRAEETKGRTVKPAPRAALKARKSGKKTT
TATSAKKVSEMPDFVAPQLCTSVERPPAGEGWCHEIKFDGYRVQLRVEDGEATLKTRKGL
DWTDKFASIAKEAGALPDAMIDGEIVALDHNGAPNFSSLQAALSDGKTEDLIFFAFDLLF
AEGQDCRRLPLGERKARLKELLEARKRKSVQIRYVEHFESGGDAVLQSACKLELEGVVSK
KLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRGDHLAFVGMVGTGF
GADKVKRIMPSLKAMEAKESPFGGKNAPKKAREVHWLKPELVAEIEFAGFTADGNIRQAA
FKGLRQDKPAEEVEAETPVDTELAEPSTGRAKPAAKAKSARSAKQPGGTAEVMGVVISKP
DKELWPDDGEGSPVTKLDLARYLEAVGDWMIVHLKGRPCSLIRAPDGIKGECFFQRHAMQ
GTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDTPGRLVFDLDP
APDVDFAEVVQAAKEMRQRLTDLGMESFCKTTGGKGLHVVVPLLHGARDKVTWKEAKAFA
QGVCQWMADDDPERYLLNMSKKLRKGKIFLDYLRNDRMSTAVAPLSPRARAGATVSMPLT
WAQVKSDLDPKKYTLRTVPGLLPRSKAWEGYDDAAASIKAAVKKLAGKVK
NT seq 2673 nt   +upstreamnt  +downstreamnt
gtgctgcagaaactctccacttaccgaaagaagcgtgacttcgagaaaacgcccgagccg
tcgggcaagaccgctgtggcgccgtcgaagcagcggcgcttcgtgatccagaagcatgat
gcgacccggctgcattacgatctccgtctcgaattcgacggcgtgttcaagtcgtgggcc
gtgacgaaagggccctcgctcgatccgcacgacaagcggctggcggtcgaggtcgaggat
cacccgctcgactatggcgatttcgaaggcacgattccggaaggccaatatggcggcggc
accgtgatgctgtgggaccgcggcacctgggaggcggaggatccggaagccggcttcagg
aaaggcgatctcaagttcacgctgcacggcgacaagctgcatggcagctgggtgctggtg
cgcatgcgcaaccgcggcggcgagaagcgaaccaattggctcttgatcaagcaccgcgac
gaatatgccagcgaggaccaagacatcctcggcgaggacaagtcggtcgcctccggccgt
gcgatggagcagatcgccgaaggcaaggggcgtgcgcccaagccgttcatgctggcgaag
ggcacgggcaaggctgacgcggtctggcagtccaatcgcgccgaggagacgaagggccgc
acggtcaagcccgcgccgcgcgcggccttgaaggcccgaaagtcgggaaagaaaacgacg
acggccacgagtgccaagaaggtctcggagatgccggatttcgtcgcgccgcagctttgc
acctcggtcgagcggccgccggccggtgaaggctggtgccacgagatcaagttcgacggc
tatcgcgtgcagctccgggtcgaggatggcgaggcgacgctgaagacgcgcaagggcctc
gattggaccgacaagtttgcgagcatcgcgaaggaggccggcgcactgccggacgcgatg
atcgacggcgagatcgtcgcgctcgatcacaacggcgcgccgaatttctcctcgcttcag
gccgcgctgtcggacggcaagaccgaggacctcatcttctttgcgttcgatctgctgttt
gccgagggacaggactgccgccgtctgccgctcggcgagcgcaaggcacgactgaaggaa
ttgctggaagcgcgcaagcgcaagtcggtgcagatccgctatgtcgagcatttcgagagc
ggcggcgacgcggtgctgcaatcggcctgcaagctcgagctcgaaggcgtggtgtcgaag
aagctggatgctccctaccgatcggggcgcaccgaaagctggaccaaagcgaaatgccgc
gccggtcatgaggtcgtgatcggcggctacaagaccaccaatggcaaattccgctccttg
atggccggcgtgcatcgcggcgaccatctcgctttcgtcggcatggtcggcaccggcttt
ggtgccgacaaggtcaagcggatcatgccgtcgctgaaggcgatggaagccaaggagagt
cccttcggcggcaagaatgcgccgaagaaagcccgcgaggtgcattggctgaagcccgag
ctcgtcgccgagatcgaattcgccggctttaccgccgacggtaacatccgccaggccgcg
ttcaagggcctgcgccaggacaagccggccgaggaggtcgaagccgagacgcccgtcgat
accgagctcgccgaaccttcgacggggcgggcgaagcccgccgcaaaagccaaatccgct
cgctcggcgaaacagccaggtggaaccgcggaggtgatgggcgtcgtcatctccaagccg
gacaaggagctgtggcctgacgatggagaaggttctccggtcaccaagctcgatcttgcg
cgttatctcgaggccgtcggcgactggatgatcgtccacctcaagggccggccgtgctcg
ttgatccgtgcgcctgacggcatcaagggcgagtgcttcttccagcgccacgccatgcag
ggcacctcgaacctgctcgagctcgcaagagtctccggcgatcgcaagccctacctgcag
atcgaccggatcgaagggctcgcggccgtcgcgcagatcggcggggtcgagctgcacccc
tggaattgcgcaccttatgcctatgacacgccggggcggctggtgttcgatctggacccg
gcgccggatgtcgacttcgccgaggtcgtgcaggcggccaaggagatgcggcagcgtctg
accgatctcggcatggagagcttctgcaagaccacgggcggcaagggccttcacgtcgtg
gtgccgctgcttcacggcgcgcgcgacaaggtgacctggaaagaggccaaggcgttcgcg
caaggcgtctgccagtggatggccgacgacgatcccgagcgctatctgctcaacatgtcc
aagaagctgcgcaagggaaagatcttcctcgattatctgcgcaatgaccggatgtcgacg
gcggtggccccgctgtcgccgcgcgcgcgcgccggcgccacggtctcgatgccgctgacc
tgggcgcaggtgaagagcgatctcgatccgaagaaatatacgctgcgcacggtgcccggc
ctgttgccacggtcgaaggcctgggagggctatgacgacgcggccgcctcgatcaaggcg
gcggtgaagaagctcgcggggaaagtgaagtag

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