Bradyrhizobium guangdongense: X265_09370
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Entry
X265_09370 CDS
T05902
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgq
Bradyrhizobium guangdongense
Pathway
bgq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X265_09370 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgq03400
]
X265_09370 (ligD)
Enzymes [BR:
bgq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X265_09370 (ligD)
DNA repair and recombination proteins [BR:
bgq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X265_09370 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QAU37866
UniProt:
A0A410V2J5
LinkDB
All DBs
Position
1931936..1934608
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AA seq
890 aa
AA seq
DB search
MLQKLSTYRKKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWEAEDPEAGFR
KGDLKFTLHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEYASEDQDILGEDKSVASGR
AMEQIAEGKGRAPKPFMLAKGTGKADAVWQSNRAEETKGRTVKPAPRAALKARKSGKKTT
TATSAKKVSEMPDFVAPQLCTSVERPPAGEGWCHEIKFDGYRVQLRVEDGEATLKTRKGL
DWTDKFASIAKEAGALPDAMIDGEIVALDHNGAPNFSSLQAALSDGKTEDLIFFAFDLLF
AEGQDCRRLPLGERKARLKELLEARKRKSVQIRYVEHFESGGDAVLQSACKLELEGVVSK
KLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRGDHLAFVGMVGTGF
GADKVKRIMPSLKAMEAKESPFGGKNAPKKAREVHWLKPELVAEIEFAGFTADGNIRQAA
FKGLRQDKPAEEVEAETPVDTELAEPSTGRAKPAAKAKSARSAKQPGGTAEVMGVVISKP
DKELWPDDGEGSPVTKLDLARYLEAVGDWMIVHLKGRPCSLIRAPDGIKGECFFQRHAMQ
GTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDTPGRLVFDLDP
APDVDFAEVVQAAKEMRQRLTDLGMESFCKTTGGKGLHVVVPLLHGARDKVTWKEAKAFA
QGVCQWMADDDPERYLLNMSKKLRKGKIFLDYLRNDRMSTAVAPLSPRARAGATVSMPLT
WAQVKSDLDPKKYTLRTVPGLLPRSKAWEGYDDAAASIKAAVKKLAGKVK
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcagaaactctccacttaccgaaagaagcgtgacttcgagaaaacgcccgagccg
tcgggcaagaccgctgtggcgccgtcgaagcagcggcgcttcgtgatccagaagcatgat
gcgacccggctgcattacgatctccgtctcgaattcgacggcgtgttcaagtcgtgggcc
gtgacgaaagggccctcgctcgatccgcacgacaagcggctggcggtcgaggtcgaggat
cacccgctcgactatggcgatttcgaaggcacgattccggaaggccaatatggcggcggc
accgtgatgctgtgggaccgcggcacctgggaggcggaggatccggaagccggcttcagg
aaaggcgatctcaagttcacgctgcacggcgacaagctgcatggcagctgggtgctggtg
cgcatgcgcaaccgcggcggcgagaagcgaaccaattggctcttgatcaagcaccgcgac
gaatatgccagcgaggaccaagacatcctcggcgaggacaagtcggtcgcctccggccgt
gcgatggagcagatcgccgaaggcaaggggcgtgcgcccaagccgttcatgctggcgaag
ggcacgggcaaggctgacgcggtctggcagtccaatcgcgccgaggagacgaagggccgc
acggtcaagcccgcgccgcgcgcggccttgaaggcccgaaagtcgggaaagaaaacgacg
acggccacgagtgccaagaaggtctcggagatgccggatttcgtcgcgccgcagctttgc
acctcggtcgagcggccgccggccggtgaaggctggtgccacgagatcaagttcgacggc
tatcgcgtgcagctccgggtcgaggatggcgaggcgacgctgaagacgcgcaagggcctc
gattggaccgacaagtttgcgagcatcgcgaaggaggccggcgcactgccggacgcgatg
atcgacggcgagatcgtcgcgctcgatcacaacggcgcgccgaatttctcctcgcttcag
gccgcgctgtcggacggcaagaccgaggacctcatcttctttgcgttcgatctgctgttt
gccgagggacaggactgccgccgtctgccgctcggcgagcgcaaggcacgactgaaggaa
ttgctggaagcgcgcaagcgcaagtcggtgcagatccgctatgtcgagcatttcgagagc
ggcggcgacgcggtgctgcaatcggcctgcaagctcgagctcgaaggcgtggtgtcgaag
aagctggatgctccctaccgatcggggcgcaccgaaagctggaccaaagcgaaatgccgc
gccggtcatgaggtcgtgatcggcggctacaagaccaccaatggcaaattccgctccttg
atggccggcgtgcatcgcggcgaccatctcgctttcgtcggcatggtcggcaccggcttt
ggtgccgacaaggtcaagcggatcatgccgtcgctgaaggcgatggaagccaaggagagt
cccttcggcggcaagaatgcgccgaagaaagcccgcgaggtgcattggctgaagcccgag
ctcgtcgccgagatcgaattcgccggctttaccgccgacggtaacatccgccaggccgcg
ttcaagggcctgcgccaggacaagccggccgaggaggtcgaagccgagacgcccgtcgat
accgagctcgccgaaccttcgacggggcgggcgaagcccgccgcaaaagccaaatccgct
cgctcggcgaaacagccaggtggaaccgcggaggtgatgggcgtcgtcatctccaagccg
gacaaggagctgtggcctgacgatggagaaggttctccggtcaccaagctcgatcttgcg
cgttatctcgaggccgtcggcgactggatgatcgtccacctcaagggccggccgtgctcg
ttgatccgtgcgcctgacggcatcaagggcgagtgcttcttccagcgccacgccatgcag
ggcacctcgaacctgctcgagctcgcaagagtctccggcgatcgcaagccctacctgcag
atcgaccggatcgaagggctcgcggccgtcgcgcagatcggcggggtcgagctgcacccc
tggaattgcgcaccttatgcctatgacacgccggggcggctggtgttcgatctggacccg
gcgccggatgtcgacttcgccgaggtcgtgcaggcggccaaggagatgcggcagcgtctg
accgatctcggcatggagagcttctgcaagaccacgggcggcaagggccttcacgtcgtg
gtgccgctgcttcacggcgcgcgcgacaaggtgacctggaaagaggccaaggcgttcgcg
caaggcgtctgccagtggatggccgacgacgatcccgagcgctatctgctcaacatgtcc
aagaagctgcgcaagggaaagatcttcctcgattatctgcgcaatgaccggatgtcgacg
gcggtggccccgctgtcgccgcgcgcgcgcgccggcgccacggtctcgatgccgctgacc
tgggcgcaggtgaagagcgatctcgatccgaagaaatatacgctgcgcacggtgcccggc
ctgttgccacggtcgaaggcctgggagggctatgacgacgcggccgcctcgatcaaggcg
gcggtgaagaagctcgcggggaaagtgaagtag
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