Bartonella grahamii: Bgr_10520
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Entry
Bgr_10520 CDS
T00922
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgr
Bartonella grahamii
Pathway
bgr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bgr_10520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgr03400
]
Bgr_10520 (mfd)
Enzymes [BR:
bgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bgr_10520 (mfd)
DNA repair and recombination proteins [BR:
bgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bgr_10520 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACS51314
UniProt:
C6ADQ9
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All DBs
Position
1184385..1187885
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AA seq
1166 aa
AA seq
DB search
MPIFKKIVIPQNNSVHMIFDGVPDGFEAFALAKLSSEIAQGKPLIYVVRDGTKIVHLQQV
LNFIEPNLPILQFPAWDCLPYDRVSPGIAVMARRLSALAHIANLRKDPHPAIILTTANAI
MQKLPPREMIEAQLIHARVGQRNNMGNLIQFLETNGFERVTVVRDVGEFAVRGGILDIFS
PMDVEPLRLDFFGDTLESIRIFDPESQRTTGQKTELLLQGMSEVVLTPERISRFKSNYTR
TFGVSQKNNMLYEAIAQGRRFAGMEHWLPFFYENLDSFFDHCGNLPIVFEHLIEEAFIER
YRLIEDYYNARKERENDEKNSTSYHPIDPSLFYLTPERVLEGVQQSSQRIDFSPFNIPQS
LEKTVIHTNVKQGYDFVKERNAQEKNVFSSVIDHIASLRTAGKKVLLACWSEGSLNRLLQ
VLDEHGLKKIDVAKSLQTVKATPRDRILAAVIMIEHGFEAEDLAVIAEQDILGDRFIRSP
KRRKNNTNFISEISALNSGDIIVHIDHGIGQFVGLKTIKTTGILRDCLEIRYAGGDLLFL
PVENIELLSRYGSEGTEVTLDKLGGVAWQARKARLKKHLLEMAGQLIRIAAERMTRAAPA
LLPPIGPFDEFVACFPYEETEDQMNAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFISRFQGLPVKIGHASRLVKAKELAQVKKGVSDG
TIDIVIGTHALLSGAVNFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRT
LGLALSGVRELSLITTPPIDRMVVRTFISPFDALVIRETLLREYYRGGQSFYVCPRISDL
AFVEEYLKTHVPELKFVVAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPAGKVLTAAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVTELKDGELNEDKQWSPQIS
LGTTVMIPESFVPDLPLRMGLYRRLTELDDLEQIDEFAAELIDRFGPLPLEVQHLLKVFY
IKTLCRKAHVEKLDTGPKGIVIQFRNNYFANSVALVQWVGKQGSMAKIRPDQSIALIRDW
STADERLVGAANIMTQLVEMAEQHSG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcctatatttaaaaaaattgttattccccaaaataattctgttcatatgatttttgat
ggagttcctgatggattcgaagcctttgcgcttgctaaattaagttcagaaattgcacaa
ggtaaaccgctcatctatgttgtccgcgacggaacaaaaattgttcatttacaacaagtt
ttaaattttattgagccaaatttacccatacttcaatttcctgcatgggattgtttgccc
tatgatcgtgtgtcaccaggaattgctgttatggcacgtcgactatcagcattggcacac
atagcaaatttacgtaaagatccgcatcctgcaattatattaacaacagcaaatgcgatt
atgcaaaagttacctcctcgtgaaatgatagaagctcagcttattcacgcacgtgttggc
cagcgcaataacatgggaaatcttattcagtttttagaaaccaatggttttgaacgcgtt
acggttgtccgtgatgttggtgagtttgctgtaagaggaggaatacttgatatcttttct
cccatggatgttgaacctttacgtcttgatttttttggagataccctagaaagtatccgc
atatttgatccagaaagtcaaaggacaacaggccaaaaaactgaacttttattacaggga
atgagtgaggttgttcttacaccagaacgcataagccgttttaagagcaattatacccgt
acatttggtgtatcacaaaaaaataacatgctttatgaagcaattgctcaaggtcggcgt
tttgccggtatggaacattggcttccatttttttatgaaaaccttgatagtttttttgac
cattgtggcaacttaccgatagtttttgagcatctcatagaagaagccttcattgaacgc
tatcgtcttattgaggactattataacgcgcgcaaagagcgcgaaaatgatgaaaaaaat
tctacttcttatcatccaatagatcctagtcttttctatttaacgccagagcgtgttttg
gagggtgtgcaacaatcttcacagcgtattgatttttcgccttttaatattccacaaagt
ttggaaaaaactgttattcacaccaatgttaaacagggatatgattttgtaaaagagcgt
aatgcgcaggaaaaaaatgttttttcaagtgttattgatcatatcgcatctttacgcact
gctggtaaaaaagtgcttttagcgtgttggagtgaaggatctctcaatcgtttgctacaa
gttctcgatgagcatggattgaaaaaaatagatgttgcaaaatccttgcaaactgtcaaa
gcaacaccacgagatcgcatattagcagctgttatcatgatagaacatggttttgaggct
gaagatttggctgttatagcagagcaagatatccttggcgatcgttttataagatcgcca
aagcggcgtaaaaataatacaaattttatttctgaaatttctgctttaaattctggtgat
attattgtgcatatcgaccacggtattggccaatttgttggtcttaaaaccatcaaaact
actggaattttacgagattgtcttgaaattagatatgctgggggtgatttactcttttta
cctgttgaaaatattgagcttctctcacgttatggctcagaaggaacagaggtaacttta
gataaattagggggtgttgcttggcaagcacgtaaagctcggcttaaaaaacatttattg
gaaatggcagggcaattaattcgtatagctgcagagcgtatgactcgtgctgcgcctgct
ttacttccaccaattggaccatttgatgagtttgttgcttgctttccctatgaagaaacg
gaagatcaaatgaatgcaattgatgctgttttagacgatttagcctcaggaaagcctatg
gatcgcttgatatgcggtgatgttggttttggaaaaaccgaagtagctattcgaagtgct
tttgtcgcagcattaaatggatatcaggttgctgttgttgtaccgacaactttgctttca
cgtcaacattacaagacatttatttcgcgttttcaaggattaccggttaaaattggacat
gcttcaaggcttgtaaaagcgaaagaacttgcacaagtaaaaaaaggtgtttcagatggt
acaatcgatattgtcattggaacccatgcattattaagtggtgcagttaattttttacgg
ttaggccttctcatcattgatgaggagcagcattttggtgtcaaacacaaagagcgttta
aaagagcttaaaagtgatattcatgttctcacactttcagcaactcccataccacgcact
ttagggttagcattatcgggtgtacgtgaactttcattgataacaacgccccccattgat
agaatggtggttcgtacttttatttcaccttttgatgcacttgttatacgagagaccctg
cttcgagaatattatcgtggcggacaaagtttctatgtttgtcctcgtatttctgatctg
gcttttgtagaagaatatctcaaaacacatgtgccagaactgaaattcgttgtggctcat
ggacaaatgccggctggacaacttgatgatatcatgaatgcattttatgatgggcaatat
gatgttttgctatcgacaaccattattgaatctggtcttgatattccaacagccaatacc
ctaattgtgcatcgcgctgagatgtttggtctttctgcactctatcagttacgagggagg
gtagggcgctcaaaacaacgtgcttatgcactttttacatttcctgctggtaaagtttta
acagctgctgctgatcgccgtcttaaagttttacaatctcttgacaccttgggggccggt
tttcaattggcaagccatgacatggatatccgcggttcaggcaattttttaggtgaagag
caatcggggcatattaaagaagttggatttgaactctatcaaaaaatgcttgaagaagct
gttactgaattaaaagatggagagctaaatgaagataagcaatggtctcctcaaatttca
cttggtacaacagtgatgataccagaaagtttcgtgcctgacttgccattacgtatgggg
ctttatcgtcgtttaacagaacttgatgatttagaacaaattgatgaatttgcagcggag
ttaattgatcgctttggtcctttaccgcttgaagttcaacaccttcttaaagtcttttat
atcaaaacattgtgtcgaaaagcgcatgtagaaaaattggatactggaccaaaggggatt
gttatacagtttcgcaataattattttgcaaatagtgttgctcttgttcagtgggttgga
aaacaaggttcgatggcaaaaattcgaccagatcaaagtatcgctcttattcgtgattgg
tccacagcggatgaaaggcttgttggagcagcgaatattatgacacagcttgtcgaaatg
gcagaacaacattctggttaa
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