Biomphalaria glabrata (bloodfluke planorb): 106061166
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Entry
106061166 CDS
T07368
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bgt
Biomphalaria glabrata (bloodfluke planorb)
Pathway
bgt03013
Nucleocytoplasmic transport
bgt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bgt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106061166
03015 mRNA surveillance pathway
106061166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgt03019
]
106061166
Enzymes [BR:
bgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106061166
5.6.2.5 RNA 5'-3' helicase
106061166
Messenger RNA biogenesis [BR:
bgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106061166
mRNA cycle factors
Common to processing body (P body) and stress granule
106061166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
SRP54
ATPase
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
106061166
NCBI-ProteinID:
XP_013074693
UniProt:
A0A2C9JNF4
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEETDLLGADTQGSEYEFTDFTLPSQTQSQTQSHQEVNASQNQ
SQINGIDHVIENGDVNITVSTITQGMGELNFEEEPEENQFYMKDLPKHACSYCGIHDPAC
VVYCNASKKWFCNGRGNTSGSHIINHLVRAKTKEVTLHKDGPLGETVLECYNCGCRNVFL
LGFIPAKAESVVVLLCRHPCANLSNLKDMNWDPSQWQPLINDRSFLSWLVKVPSEQDQLR
SRQITAQQINKLEELWKDNPDAKLEDLERTGLDEEPTQVQLRYDDAYQYQNIFGPLVKLE
ADYDKRLKESQTQDNIVVRWDTGLNKKRIAYFCLSKANDEMKLMHGDELKLRYVGELQKP
WSGVGHVIKIPDNHSDEIAIELKSNAGVPETCTHNFVLDFVWKSTSFDRMQSALKTFAVD
ETSVWGYIYHKLLGHEVEDIALKCTLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATVVYHMVKQNNGPVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAID
SPVSFLALHNQIRNMDTMPELNKLQQLKDETGELSSSDEKRYRSLKKQCEKELLQAADVI
CCTCVGAGDPRLAKLQFSSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCK
KAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRTRQ
GLDFPWPQPDKPMFFYSTFGTEEISSSGTSYLNRTEAANIEKLATKLLRAGVKPEQIGII
TPYEGQRAYQVQHMQYNGSLNKKLYMEIEVASVDAFQGREKDFILLSCVRSNEHQGIGFL
NDPRRLNVALTRARYGVIIVGNPKILSRQTLWCHLLTYYREQKCLVEGPLSSLKECFVNI
SKPRKLVNTTNPGGRFMSNTMFDARELLVPGNAYDRANNSYREPVMRTHDQLGFIGPERA
YSRTAMNIPVPVNMFLPHPLPPQFNNSQASQGGQKGNRGWSGNRRQKPNKGSLANNSSQS
QASQEFSQGPLTQGMSMSQHFQMSQGLSGLSQPGLSGLSQPELSQDSFMADDFRSQMDVL
LSQDSTYQGDRLYPTSHLSQGPFN
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcttatggccctagttcacaaacactaacatttttagaaacagaagag
actgatctgttaggggctgacactcaaggctctgaatatgagttcacagacttcacattg
ccttcacaaacccagtcacaaactcaatcacaccaggaggttaatgcaagtcaaaatcaa
agccaaataaatggcatagatcatgttattgaaaatggtgatgtcaatattactgtatct
accattacacaaggcatgggtgagcttaattttgaagaagaacctgaagagaatcaattt
tatatgaaagacttgccaaaacatgcttgctcgtactgtggaatacatgatccagcttgt
gtagtttactgtaatgctagtaagaaatggttctgtaatggaagaggaaatacatctggc
agccatattatcaatcatcttgtgagagcaaagactaaagaggtcactttgcataaagat
gggcctcttggtgagactgtgctggaatgttacaactgtggttgtcggaatgtatttctt
cttggatttattcctgctaaagctgaatcagttgtagttctgttgtgcaggcatccatgt
gcaaatcttagcaacttaaaggatatgaactgggatccaagtcagtggcaaccattaatc
aatgatagatcttttttgtcttggcttgtgaaagtacccagtgaacaagaccagctgagg
tctcggcaaataacagctcaacaaatcaataagcttgaagaattatggaaggacaatcct
gatgctaaattagaggatttggaaagaactggtttggatgaagaaccaacccaagttcag
ttgagatatgatgatgcctaccaatatcaaaatatctttggacctttggtgaaacttgaa
gctgattatgacaaaaggctcaaggaatctcagactcaagacaatattgttgttcgatgg
gacacaggattgaataaaaaacgaatagcctatttctgtctttcgaaagccaatgatgaa
atgaagctaatgcatggggatgagttaaaactgagatatgttggtgaactgcagaaaccc
tggtctggtgttggacatgttattaaaatcccagacaaccatagtgatgagattgccatt
gagctcaaaagtaatgctggtgtacctgagacatgtacacataattttgtcctggatttt
gtgtggaaatctacatcttttgatagaatgcagtcagcgttgaaaacttttgcagtggat
gagacatcagtctggggatacatctaccataagcttctaggccatgaagtggaagatatt
gcattgaaatgtacccttccaaaacgcttttctgctccaggtttgcctgagctcaatcat
tctcaggtgtatgcagttaaaactgtcttgcaacgccctttgagtcttattcagggccca
ccaggaactggaaaaacagtcacatcagcgacagttgtttaccatatggtcaaacagaat
aatggacctgtccttgtgtgtgctccatccaatattgctgttgatcagttaactgaaaaa
atacataaaactggtctcaaggttgttaggttgtgtgccaagtctagagaagctattgac
tctccagtttctttccttgcactgcacaaccagataagaaatatggatacaatgcctgag
ctgaataagttacagcagcttaaagatgaaactggtgaattgtcatcaagtgatgaaaaa
cgttacagatctctaaaaaagcaatgtgaaaaggagttgttacaggctgcagatgttatt
tgttgcacatgtgttggtgctggagatcctcgcttagcaaaacttcagtttagttcagtt
ctcattgatgaaagcactcaagctactgaaccagaatgcatgattcctgtgatattagga
tgtagacagcttattttagtgggtgaccactgtcagttgggaccagttgtgatgtgcaag
aaagctgctcgggcaggactctcacagtctctatttgaacgtttggttgtgttgggtatt
cgcccaatacgactgcaagtccagtatcgcatgcatcctgcactgagcagttttccatct
aacattttttatgaaggatctttacaaaatggtgttactgctgctgaccgtacgcgacaa
ggcttagactttccttggccccagccagacaagccaatgtttttttacagcacttttgga
actgaagagatttctagttctggaacatcatatttgaatagaactgaagctgccaatata
gagaaactggcaacaaaactgctgagagctggggtaaaacctgagcaaattggaattatc
accccctatgaaggtcaaagggcttatcaagtgcaacatatgcaatacaatggatcacta
aataaaaaactgtatatggaaatagaggttgccagtgttgatgcttttcagggtagagaa
aaagattttattttgctctcatgtgtcagatcaaatgaacaccagggcattggattctta
aacgacccaagacgtctgaatgttgccctgacgcgtgccagatatggtgtgatcatagtg
ggaaatcccaaaattctatccaggcaaaccttgtggtgtcacctattgacttattacaga
gagcagaagtgtcttgttgagggaccactttcaagcttgaaagaatgttttgtcaacatc
agcaagcccagaaaacttgttaatacaactaaccctggtggcagatttatgagtaacaca
atgtttgatgctagggaactattggttcctggaaatgcttatgacagagctaacaattcc
tatagagaaccagtaatgcgtactcatgatcagctgggattcattggtccagagagagct
tattccagaactgcaatgaatattccagtccctgtcaatatgtttttgccgcatcctttg
cctcctcagtttaataatagccaagcttcacaaggtggtcaaaagggcaatcgaggctgg
agtggtaatcgaagacaaaaaccaaacaaaggatcacttgcaaataattcttctcaaagt
caggccagccaggaattttcccaaggtcctttgactcaaggtatgtcaatgagccaacat
tttcaaatgagccaaggcttaagtgggctttctcagccaggtctgagtgggctatcacag
ccagagctttcacaggacagcttcatggcagatgattttaggtctcaaatggatgttctt
ctgtcgcaagactcaacctaccaaggagatcgtctgtacccaacatcacatctctcccag
gggccatttaactag
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integrated database retrieval system
