Bordetella genomosp. 8: CAL12_19610
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Entry
CAL12_19610 CDS
T09515
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAL12_19610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgv03400
]
CAL12_19610
Enzymes [BR:
bgv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAL12_19610
DNA repair and recombination proteins [BR:
bgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAL12_19610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
UB2H
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ARP82801
UniProt:
A0A1W6YP66
LinkDB
All DBs
Position
4310335..4313799
Genome browser
AA seq
1154 aa
AA seq
DB search
MPADFPSTPAAPLVPSTDSTLAALKPGTRYTQPRPPGSGDAWLLADLARQARRPLLVLTA
DPLEAQRLTDEILLFAPELRVRQLPDWETLPYDAFSPHHDLISERLKTLDALMRQSVDVL
TVPVTTALYRLAPPAFMAAYTFSFKQRDKLDEAALRAQLTLANYTHVTQVTAPGEFCLRG
GLIDLFPMGSAVPYRLDLFDNEIESIRAFDVDTQRSLYPVNQVQLLPGREFPMDEEARNR
FRARFRELFEGDPSRALPYRDMGNGIAFAGIEYYLPLFFDQTATLFDYLAPSTITVTIGD
IDDAIRRFAQDTGSRYDFLKSDRERPVLPPSALFLDADSLFGQLKDFERLSLTAERGHPD
IGPAPDVAVTRRSDDPVARLRAVVDSGKWRLLLCADSAGRRETLAQMLAEFDLAPDFEAA
SIEDFRVSAARLALLAAPLTSGFSLPGEGIAFITENDLYPGQAAVSRRGRREQERASNVE
AMVRDLSELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVPVSQLHV
IARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLDLYAKRAAREGYAFKLQLN
DYEAFAEGFGFEETADQAAAIQAVIMDMTSGKPMDRLVCGDVGFGKTEVALRAAFLAVAN
GKQVALLCPTTLLAEQHAQTFADRFADWPVRVVELSRFRSAKEVAAAIQGINSGSVDIVI
GTHKILSKDVRFKQLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMSLE
GIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYFLHNEVETIHNRRAR
LEELVPEARIAVAHGQMGERELEQVMKGFYQQRFNVLLCTTIIETGIDVPTANTIVIHRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMH
DLEIRGTGEVLGESQSGNIQEVGFSMYTDMLNEAVRALKAGEEPDLEAPFGKSCEVNLHA
PALLPADYCADVHARLAVYKRLSHAEDEDDLIRIQEELIDRFGKLPESAQTLLASHRLRL
AAQALGIIKIDASETQALIQFGPNPPIDSMRIIELVQKQRHIKLAGQDKLRVDIKGQQIP
ARVDAVRTVLRALA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagatttcccctctactcccgcggcgccgctggtcccgtcgaccgactccacc
ctggcggccctgaaacccggcacccgatatacgcagccccgtcctcccggttcgggcgat
gcgtggttattggccgacctggcgcgccaggcgcgccggccgctgctcgtgctgacggcc
gacccgctggaggcgcaacgcctcaccgatgaaatcctgcttttcgcacctgagctgcgc
gtgcgccaattgccggactgggagacgctgccctacgacgcgttctcgccgcaccacgac
ctgatatccgagcggctcaagaccctggacgcgctgatgcggcagtccgtggacgtgctg
acggtgccggtgaccaccgccttgtatcgcctggcaccgccggccttcatggcggcctat
acgttctcgttcaagcagcgcgacaagctggacgaagccgccctgcgcgcgcaattgacg
ctggccaattacacgcacgtcacgcaggtcacggcgcccggtgaattctgcctgcgcggc
ggcttgatcgacctgttccccatgggttcggccgtgccctaccggctggacctgttcgac
aacgagatcgaatcgatacgtgccttcgacgtcgacacccagcgcagcctgtacccggtc
aatcaggtgcagctgctgcccgggcgcgagttcccgatggacgaagaggcgcgcaaccgc
ttccgcgcgcgctttcgcgagctcttcgaaggcgatccctcgcgtgccctgccgtaccgc
gacatgggcaatggcattgccttcgccggcatcgagtactacctgccgctgttcttcgac
cagaccgctacgctgttcgactacctggcgccctctaccatcacggtgacgataggcgac
atcgacgacgccatccgccgcttcgcccaggacaccggcagccgctacgacttcctgaag
agcgaccgcgaacgtccggtgctgccgccatcggcgctgttcctggacgcggactcgctg
ttcggccagttgaaggatttcgagcgtctttcgctgaccgccgaacgcggccatccggac
atcggcccggcaccggacgtagccgtcacgcggcgctccgacgatccggtggcccgcctg
cgcgcggtggtcgacagcggcaagtggcgcctgctgctgtgcgcggattccgcgggccgg
cgcgaaacgctggcgcagatgctggccgaattcgacctggcgcccgatttcgaagccgcc
tccatcgaagacttccgcgtttccgcggcgcgcctggcgctgctggcggcgccgctgaca
tcgggcttcagcctacccggcgaaggcatcgccttcatcaccgaaaacgatttgtacccc
ggccaggcggcggtcagccggcgcggccggcgcgagcaggaacgcgccagcaacgtcgaa
gccatggtgcgcgacctgtccgaactgcgcgaaggcgatccggtcgtccatgcgcagcac
ggcatcgggcgctatcacggcctggtcaacatggacatgggcgaaggcgaaatggagttc
ctccatctcgaatacgccaacggcagcacgctgtacgtgccggtctcgcagttgcacgtc
atcgcgcgctacagcggcgccgatccggaagccgcgccgctgcaccagctgggctccggc
caatgggacaaggcgcgacgcaaggccgccaagcaagtgcgcgacaccgccgccgaactg
ctggacctgtacgccaagcgcgccgcgcgcgaaggctatgccttcaagctgcagctcaac
gactacgaggctttcgccgaaggcttcggcttcgaggaaaccgccgaccaggccgcggcc
atccaggccgtcatcatggacatgacctcgggcaagcccatggatcgcctggtctgcggc
gacgtcggtttcggcaagaccgaggtcgcgctgcgcgcggccttcctggcggtggccaac
ggcaagcaggtcgccctgctctgtcccaccaccctgctggccgagcagcacgcgcagacc
ttcgccgaccgcttcgccgactggccggtgcgcgtggtggaactgtcccgcttccgatcc
gccaaggaagtcgcggcggccatccagggcatcaacagcggcagcgtcgacatcgtcatc
ggcacccacaagatcctgtcgaaggacgtgcgcttcaagcagctgggcctggtcatcatc
gacgaggaacaccgcttcggcgtccgccagaaggaagccctgaaatcgctgcgggccgaa
gtcgacgtactgacactgaccgccacgccgatcccgcgcaccctggggatgtcgctggaa
ggcatacgcgacttctccgtcatcgccaccgcgccgcagaagcgcctggcgataaaaacc
ttcgtgcgccgcgaagacggcagcaccatacgcgaagccctgctgcgcgaattgaagcgc
ggcgggcaggcctacttcctgcacaacgaggtcgaaaccatccacaaccgccgcgcgcgc
ctggaagagctggtgcccgaagcgcgcatcgccgtcgcgcacgggcagatgggcgaacgc
gagctggaacaggtgatgaaaggcttctaccagcagcgcttcaatgtcctgctgtgcacc
accatcatcgaaaccggcatcgacgtgccgacggccaacaccatcgtcatccatcgtgcc
gaccgcttcggcctggcccagctgcaccagttgcgcggacgcgtgggccgctcgcatcac
caggcctatgcctacctgctgacgccgggcgaagacgcgatcacgtccaacgccaagaag
cggctggaggccatccaggccatggaagaactgggatccggcttctacctggccatgcat
gacctggaaatccgcggtaccggcgaagtcctgggcgaatcgcagtcgggcaacatccag
gaagtcggcttctccatgtacacggacatgctgaacgaagccgtgcgtgcgctgaaggcg
ggtgaagaacccgacctggaggcaccattcggcaagtcctgtgaagtcaacctccacgcg
ccggccctgctgccggcggactactgcgccgacgtgcacgcgcgcctggccgtatacaag
cgcctgtcccatgcggaagacgaagacgacctgatccgcatccaggaagaattgatcgac
cgcttcggcaagctgccggagtcggcgcagaccctgctggcctcgcaccgcctgcggctg
gcggcgcaggcgctgggtatcatcaagatcgacgccagcgagacccaggcgctgatacag
ttcggaccgaacccgcccatcgattccatgcgcatcatcgaactggtgcagaagcagcgg
cacatcaagctggccggacaggacaagctgcgcgtcgacatcaagggtcagcagattccc
gcgcgcgtggacgcggtgcgcacggtgctgcgcgcactggcatga
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