Candidate division Kazan bacterium GW2011_GWA1_50_15: VE98_C0001G0251
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Entry
VE98_C0001G0251 CDS
T03988
Name
(GenBank) ATP dependent DNA ligase, DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgw
Candidate division Kazan bacterium GW2011_GWA1_50_15
Brite
KEGG Orthology (KO) [BR:
bgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VE98_C0001G0251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgw03400
]
VE98_C0001G0251
Enzymes [BR:
bgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VE98_C0001G0251
DNA repair and recombination proteins [BR:
bgw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VE98_C0001G0251
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKM84708
UniProt:
A0A0G4BBE9
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Position
complement(242565..243488)
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AA seq
307 aa
AA seq
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MLCKPVDKPFNDKDWLFECKIDGTRIILVKHRQNIKLFTRRGIDRSRQFPEIVEVARKLP
TISVVLDGELAATKRVASSFQALQPRMQQTNPAIIARLARTVPVVYHAFDILALEGKSVT
NQPLVARKKLLKRIAKSVRIKYLEGVDGKGVALFAKAKRSGWEGIIGKKKDSKYLPGKRG
YGWVKIKAHNEQELVIGGFTRGYGKVARTFGAVLVGYYARGKLKFAGQVGTGFTQLERRR
LKLIMGRLKTARSPFADDLDNTGTTWIKPQLVGQFKFLEWTNDNILRAPVYLGLRDDKPA
NLVKKEA
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgtaagccagtagacaaacccttcaacgataaggactggctctttgagtgcaag
atagacggcactcgcattattctagtcaaacaccgccaaaacatcaaactatttacccgc
cggggaattgaccggagccgccaatttccggaaatagttgaggtcgctcgcaaactgccg
acaatctcggtggtgttggatggcgaattggccgccactaaacgggtggcgagctcgttc
caagccctccagccgcggatgcagcaaactaatccggctatcatcgccaggttagctcgc
accgtgccggtcgtttatcacgcttttgatattttggcactggagggtaagtcagttacg
aaccagccactggtggccagaaaaaaactgctgaagcggatcgctaaaagcgttcggatt
aaatatctcgagggcgttgatggcaaaggtgtggctctgttcgccaaggccaagcgctcc
ggttgggaagggattatcggcaaaaagaaggatagcaagtatctgccggggaagcgggga
tacggctgggtgaagatcaaagctcacaacgaacaagaactggtgatcggcggtttcacc
cgcggttatggtaaagtcgcccgtaccttcggcgctgttcttgtcggctattatgcccgc
ggcaaactgaaatttgccggtcaggtcggaaccgggttcacccagctagaacgccgccgc
ctgaaactaatcatgggtcggctcaaaactgcccgttcgccatttgcagacgacttagac
aatactggtaccacctggattaaaccgcagttggtcggccagttcaaatttctagagtgg
accaacgataacattctccgcgcaccggtctacctgggtctacgcgatgacaaacccgcc
aacctagttaaaaaggaggcttga
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