Bifidobacterium pullorum subsp. gallinarum: ESN35_04275
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Entry
ESN35_04275 CDS
T06507
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgx
Bifidobacterium pullorum subsp. gallinarum
Pathway
bgx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ESN35_04275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgx03400
]
ESN35_04275 (mfd)
Enzymes [BR:
bgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ESN35_04275 (mfd)
DNA repair and recombination proteins [BR:
bgx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ESN35_04275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
P53_C
AroM
CBS
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QAY32725
UniProt:
A0A4P6DTD0
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All DBs
Position
CACC514:1071736..1075269
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AA seq
1177 aa
AA seq
DB search
MNQLVEGSLSGLLESLDRDPSFHALATDDFDRPEGAADPSIVVGAPEGVRPALAAAVARR
SPVVYLVASGREAEETVNALRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVFR
RLCHPEPGDAMFGPIRILVMPVRSLIQPVVAGLGDVEPLVFTVGEELPLDEAAARLVENS
YTRVDLVMDRGEFAVRGGLLDVFPPTAPHPVRIEFFGDEVDSIREFHASDQRTYGDGLRS
IWATPCREVQLTEAIRERARSLIGRIPNAEDMLESIANAIPVEGMESLLPALVDDMESIT
GMLPDHAVVMLSDPEKLRRAADDLMKTANEFLAASWHVAASGHGAGAPISFDQASFLDFD
ETITSLTYRDFDVWRLTSFTVEASRPGRIALAAHAPAEYRGDEHRAATGIEGLIDAGLQV
TVTAAAHGTLARLKRAINETGITRFETIRAQAIDGFVDTAAGVALLTERDLTGRTSAAAQ
AKTPKRRRKAIDLMELKTGDYVVHEQHGIGRFVEMRQRSVGTGDAKTTREYLVIEYAPSK
RGAPPDKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVHEIAEDLVKLYS
ARQRTPGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKADMEKPIPMDRLICGDVGFG
KTEIAVRAAFKAVQDSRQVAVLVPTTLLVQQHYETFSERYEGFPVTVRAMSRFQTTKEIN
DTIKGLQDGTVDVVIGTHKLLNPKIQFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLS
LSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIRRELLRGGQVF
YVHNRVADISRMAARIQELVPEAKVGTAHGKMGEKQLDQIIRDFWHRDINVLVCTTIIET
GLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATI
AQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEAYKEPERTE
PVAVSIDLPIEASIPVDYIDSDKLRLEAYRKLAAARNEQDLEELREELTDRYGNPPIEFA
TLFAVARLRNKARALDLTEIIAQGNRVRVAKIEPPESVQMRIARIYKGVQYRPVTKTYLI
PTPFAGSFGSEPMGSDEVVAWTDQLLDDLAWKPQSRR
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaactggtcgaaggatcgctgtcggggttgctggagtcccttgacagggacccg
agcttccatgcgttggccacggacgacttcgatcgacctgaaggcgccgccgatccgtcg
attgtcgtcggcgcccccgaaggcgtgcgtccggcgcttgccgcagccgtggcccgtcgt
tccccggtcgtctatctcgtcgcatccggccgtgaggccgaggagaccgtcaacgcgctg
cgctcctggtatgacggcgatccgaacgacatcgcccagctggaggcgtgggagacgttg
ccgcatgaacgcctgtcacctcgcgccgacaccgtggccagccgtatggccgtcttccgc
cggctgtgtcatcccgaacccggcgacgcgatgttcggcccgatccgcattctggtgatg
cccgtgcgctcgctgatccaaccggtcgtcgccggtttgggcgatgtggagccgctggtc
ttcaccgtcggcgaggagctgccgctcgacgaggcggcggcccggctggtggagaactcg
tacacgcgcgtcgacctggtgatggaccgcggcgagttcgccgtccgcggcggtctgctc
gacgtgttcccaccgaccgcaccccatccggtgcgcatcgagttcttcggcgacgaggtc
gactcgatccgggagttccacgcctccgaccagcgcacctacggcgatggactcaggagc
atctgggcgacgccctgccgcgaggtgcaactcaccgaagccattcgcgaacgggcccgc
agcctaatcggccggatccccaacgccgaggacatgctcgaatcgatcgcgaacgccatt
ccggtcgaaggcatggaatccctgctgcccgccctcgtcgacgacatggagtcgatcacc
ggcatgttgccggaccatgcggtcgtcatgctgtccgatccggaaaagctgcgtcgcgcc
gccgacgatctgatgaagaccgcgaacgagtttctggcggccagctggcacgtcgccgcg
tccggtcatggtgcgggcgccccgatcagcttcgaccaggccagcttcctggatttcgat
gaaaccatcacgtcgttgacctaccgggatttcgacgtgtggcggctcaccagcttcacc
gtcgaggcatcccgtcccggacgcatcgcgttggcggctcatgcgccggccgaataccgg
ggcgacgagcatcgcgcggccaccggcatcgagggattgatcgacgccggcctgcaggtg
acggtgaccgccgccgcgcacggcacgctcgcccgactcaagcgcgcgatcaacgagacc
ggcatcacccggttcgagacgatccgcgcgcaggccatcgacggattcgtcgacacggcc
gccggcgtcgcgctgctgaccgaacgcgacctgaccggccgcaccagtgccgcggcccag
gccaaaaccccgaaacggcggcgcaaggccatcgacctgatggagctgaaaaccggcgac
tacgtggtgcacgagcagcatggcatcggccggttcgtcgagatgcgtcagcgttccgtc
ggcaccggggacgcgaagaccacgcgcgaatacctggtcatcgaatacgcgccgagcaaa
cgcggcgccccgccggacaagctgttcatccccaccgaccagctcgaccaggtcagcaag
tacatcggcgcggaggccccgaaactcaataagctgggcggctccgactgggcggccacc
aaggccaaggcccgcaagcacgtccatgagatcgccgaggatctggtcaagctgtattcg
gcccgccagcgcacgcccggcttcgcgttcagccccgacaccccgtggcagaaggagctg
gaggacgcgttcccgtaccaggagaccgccgaccagctgaccaccatcgacgaggtcaag
gccgatatggagaagccgatcccgatggaccgtctcatctgcggcgacgtgggcttcggc
aaaaccgagatcgccgtgcgcgccgccttcaaggccgtgcaggattccaggcaggtggcc
gtgctcgtgccgaccacgctgctcgtccagcagcattacgagaccttctcggagcgctac
gagggcttccccgtcaccgtcagggcgatgagccgcttccagaccaccaaggagatcaac
gacacgatcaaggggcttcaggacggcaccgtggacgtggtcatcggcacgcataagctg
ctcaaccccaagatccagttcaaggacctgggcctggtcatcatcgacgaggagcagcgc
ttcggcgtcgaacacaaggagacgctcaaggcgctgcgcaccaacgtggacgtgctctcc
ctctccgccacgccgatcccgcgcacgctggagatggcggtgaccggcatccgcgagatg
tccacgctcgccaccccgccggaggaccgtctgcccgtgctcacctatgtgggtgcctac
gaggatgcgcaggtcaccgcggcgatccggcgcgagctgctgcgcggcggccaggtgttc
tacgtgcacaaccgcgtggccgacatctcccgcatggccgcccggatccaggagctcgtg
cccgaagccaaggtcggcaccgcccacggcaagatgggggagaagcagctcgaccagatc
atccgcgacttctggcaccgcgacatcaacgtgctcgtatgcaccacgatcatcgagacc
ggcctggatatctcgaacgcgaacacgctgatcgtggaccacgccgaccgcttcggcctg
agccagctgcaccagctgcgcggccgcgtcggccgtggccgcgaacgcgcctatgcgtac
ttcctgtatgatccgagcaagccgatgacccaacagtcgcacgatcgtctggccaccatc
gcccagaacacggcgctcggctccggcttcgacgtggcgatgaaggacctcgagctgcgc
ggtaccggcaacctgctgggcgacgagcagtccggccacatcgagggcgtgggcttcgac
ctgtacgtgcgcatggtctccgaggccgtggaggcgtacaaggagccggaacgcaccgag
ccggtggccgtcagcatcgatctgccgatcgaggcgtcgattccggtggactatatagac
tccgacaagctacgtctggaggcataccgcaagctcgccgccgcccgcaacgagcaggat
ctggaggagctgcgcgaggagcttaccgaccgctacggcaacccgccgatcgagttcgcc
acgctgttcgccgtcgcgcgtctgcgcaacaaggcgcgcgcgctggacctgaccgagatc
atcgcccagggcaatcgtgtgcgcgtggccaagatcgagccgcccgagtcggtgcagatg
cgcatcgcccgcatctacaagggcgtgcagtaccggccggtcaccaagacctacctgatc
ccgaccccgttcgccggttccttcggctccgaaccgatgggctcggacgaggtggtggcc
tggaccgaccagctgctcgacgacctggcctggaagccccagtcgcgcaggtga
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integrated database retrieval system
