KEGG   Bradyrhizobium guangzhouense: XH91_08250
Entry
XH91_08250        CDS       T06161                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgz  Bradyrhizobium guangzhouense
Pathway
bgz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    XH91_08250 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgz03400]
    XH91_08250 (ligD)
Enzymes [BR:bgz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XH91_08250 (ligD)
DNA repair and recombination proteins [BR:bgz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XH91_08250 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QAU50043
LinkDB
Position
1700066..1702717
AA seq 883 aa
MLQKLSTYRKKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLNPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDDYASEDEDILAEDKSVASGR
AMEQIAGGKGRAPRPFMLAKGKGKADAVWQSNRAEETKGRTVKPAPRTALKAGKTSKKKA
MTATTAKTVSEMPDFVEPQLCTPVERPPASDGWCHEIKFDGYRVQLRVEDGEATLKTRKG
LDWTDKFGSIAKQAGELPDALIDGEIVALDHNGAPDFSSLQAALSDGKTEELIFYAFDLL
FAEGLDYRRLPLGERKQRLKKLLEARRKKTSQIRYVEHFESGGEAVLQSACKLELEGVVS
KKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRDDHLAFVGIVGTG
FGADKVKRIMPSLKAMEAKESPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIRQA
AFKGLRQDKPAEEVEAETPVDTKLAQPSTRRRAPAQPAKAKGTAEVMGVVISKPEKELWP
DGGDGEGVTKLDLARYFEAVGAWMIEHLKGRPCSILRAPDGIAGEKFFQRHAMQGTSNLL
ELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFDLDPAPDVKF
AAVVEAAKEMRQRLADVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQGVCQW
MADEDPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWAQVKG
DLDPKKYTVRTVPGLLARSKAWDGYDDAATSIKAAIKTLATKK
NT seq 2652 nt   +upstreamnt  +downstreamnt
gtgctgcaaaaactctccacctatcgaaagaagcgtgacttcgaaaagacgcctgaaccg
tcgggcaagaccgcggtggcgccatcgaagcagcgccgcttcgtgatccagaagcatgat
gcgacccgtctgcattacgatctccgcctcgaattcgacggcgtgttcaagtcctgggcg
gtgaccaaaggaccctcgctcaatccgcatgacaagcggctggcggtggaggtcgaggac
catccgctcgactatggcgatttcgaaggaacgatccccgagggacaatatggcggcggc
acggtgatgttgtgggaccgcggcacctgggagtccgatgatcccgaagccggcttcaaa
aagggcgacctcaaattcaccctgcatggtgacaagttgcatggcagctgggtgctggtg
cgcatgcgtaaccgcggcggcgagaagcgcaccaactggctgctgatcaagcatcgcgac
gactatgccagcgaggacgaggatattttggcggaggacaagtccgtggcctcgggccgc
gcgatggaacagatcgcaggcggcaaggggcgcgcgccaagaccgttcatgctggcaaaa
ggtaagggcaaggccgatgcggtctggcaatccaaccgtgccgaggagaccaaggggcgc
acggtcaagccggcgcctcgcacggcgctgaaggccggcaaaacgtcgaagaagaaggcg
atgaccgcgacgacggccaagaccgtctcggagatgcctgatttcgtggagccgcagctc
tgcaccccggtggagcggccgcccgcgtcggatggctggtgccacgagatcaagttcgac
ggctaccgggtccagctgcgcgtcgaggacggcgaggcgacgctgaagacgcgcaagggt
ctcgactggaccgacaagttcggatcgatcgcaaagcaggcaggtgaattgccggacgcg
ttgatcgacggcgagatcgtcgcgctcgaccacaacggcgcgccggacttttcctcgctg
caggccgctctgtcggacggcaagaccgaagagctgatcttctacgccttcgacctgctg
ttcgccgaaggcctcgactatcgccgtctgccgctcggcgagcgcaagcaacgcctcaag
aaattgctggaggcgcgcaggaagaagacgagccagatccgctatgtcgagcatttcgag
agcggcggcgaggcggtgctgcaatcggcctgcaagctcgagctcgaaggcgtggtgtcg
aagaagctggacgcgccctaccgttcgggccgcaccgagagctggaccaaggcgaaatgc
cgcgccggccacgaggtcgtcatcggcggctacaagaccaccaatggaaaattccgctcc
ctgatggcgggtgtgcatcgggacgatcatctcgccttcgtcggaatcgtcgggaccgga
tttggtgccgacaaggtcaaacgcatcatgccgtcgctgaaggccatggaagccaaggaa
agtcctttcggcggcaagaatgcaccgaagaagacccgcgacgtgcactggctgaagccc
gagctcgtcgccgagatcgagttcgccggatttacagccgatggcaacatccgccaggct
gcgttcaagggactgcggcaggacaagccggccgaggaggtcgaggcggaaacgcccgtg
gataccaagctcgcgcagccttccaccaggaggcgcgcgccggcgcaaccggcgaaagcg
aagggcactgccgaggtcatgggtgtcgtcatctcgaagcccgagaaggagctgtggcct
gacggcggcgatggtgagggcgtgacgaagctcgatctcgcgcgctatttcgaggccgtc
ggcgcctggatgatcgaacatcttaagggccgtccctgctcgatccttcgcgcacccgac
ggcatcgccggcgagaagttcttccagcgccatgcgatgcagggcacgtcgaacctgctc
gagctcgcaaaggtctccggcgatcgcaagccgtatttgcagatcgatcgcgtcgaaggc
ctcgcggcggtcgcacagatcggcggcgtcgagctgcatccctggaattgcgcgcccgac
gcctacgatactccgggccgtctggtgttcgatctcgatccggcgccggatgtgaagttc
gccgctgtcgtcgaagcggcgaaagagatgcggcagcggctcgccgatgtcggcatggag
agcttctgcaagaccaccggcggcaagggcctccacgtggtggtgccgctgcttcacggc
gcgcgcgacaaggtgagttggaaagaggccaaagccttcgcgcaaggcgtctgccagtgg
atggccgatgaggatcccgagcgctacctgctcaacatgtccaagaagctgcgcaacggg
aaaatctttctggactatctgcgcaacgatcgtctgtcgaccgcggtggcgccgctgtca
ccccgtgcgcgtgatggcgcgaccgtgtcgatgccggtcacctgggcgcaggtgaagggc
gatctcgatccgaaaaaatatacggtgcggactgtgcccggcctgctggcgcgatcgaag
gcctgggatggctatgacgatgcggccacgtcgatcaaggcggccatcaagacattggcg
acgaagaagtag

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