Bradyrhizobium guangzhouense: XH91_08250
Help
Entry
XH91_08250 CDS
T06161
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgz
Bradyrhizobium guangzhouense
Pathway
bgz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XH91_08250 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgz03400
]
XH91_08250 (ligD)
Enzymes [BR:
bgz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XH91_08250 (ligD)
DNA repair and recombination proteins [BR:
bgz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XH91_08250 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QAU50043
LinkDB
All DBs
Position
1700066..1702717
Genome browser
AA seq
883 aa
AA seq
DB search
MLQKLSTYRKKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLNPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDDYASEDEDILAEDKSVASGR
AMEQIAGGKGRAPRPFMLAKGKGKADAVWQSNRAEETKGRTVKPAPRTALKAGKTSKKKA
MTATTAKTVSEMPDFVEPQLCTPVERPPASDGWCHEIKFDGYRVQLRVEDGEATLKTRKG
LDWTDKFGSIAKQAGELPDALIDGEIVALDHNGAPDFSSLQAALSDGKTEELIFYAFDLL
FAEGLDYRRLPLGERKQRLKKLLEARRKKTSQIRYVEHFESGGEAVLQSACKLELEGVVS
KKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRDDHLAFVGIVGTG
FGADKVKRIMPSLKAMEAKESPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIRQA
AFKGLRQDKPAEEVEAETPVDTKLAQPSTRRRAPAQPAKAKGTAEVMGVVISKPEKELWP
DGGDGEGVTKLDLARYFEAVGAWMIEHLKGRPCSILRAPDGIAGEKFFQRHAMQGTSNLL
ELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFDLDPAPDVKF
AAVVEAAKEMRQRLADVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQGVCQW
MADEDPERYLLNMSKKLRNGKIFLDYLRNDRLSTAVAPLSPRARDGATVSMPVTWAQVKG
DLDPKKYTVRTVPGLLARSKAWDGYDDAATSIKAAIKTLATKK
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaaaaactctccacctatcgaaagaagcgtgacttcgaaaagacgcctgaaccg
tcgggcaagaccgcggtggcgccatcgaagcagcgccgcttcgtgatccagaagcatgat
gcgacccgtctgcattacgatctccgcctcgaattcgacggcgtgttcaagtcctgggcg
gtgaccaaaggaccctcgctcaatccgcatgacaagcggctggcggtggaggtcgaggac
catccgctcgactatggcgatttcgaaggaacgatccccgagggacaatatggcggcggc
acggtgatgttgtgggaccgcggcacctgggagtccgatgatcccgaagccggcttcaaa
aagggcgacctcaaattcaccctgcatggtgacaagttgcatggcagctgggtgctggtg
cgcatgcgtaaccgcggcggcgagaagcgcaccaactggctgctgatcaagcatcgcgac
gactatgccagcgaggacgaggatattttggcggaggacaagtccgtggcctcgggccgc
gcgatggaacagatcgcaggcggcaaggggcgcgcgccaagaccgttcatgctggcaaaa
ggtaagggcaaggccgatgcggtctggcaatccaaccgtgccgaggagaccaaggggcgc
acggtcaagccggcgcctcgcacggcgctgaaggccggcaaaacgtcgaagaagaaggcg
atgaccgcgacgacggccaagaccgtctcggagatgcctgatttcgtggagccgcagctc
tgcaccccggtggagcggccgcccgcgtcggatggctggtgccacgagatcaagttcgac
ggctaccgggtccagctgcgcgtcgaggacggcgaggcgacgctgaagacgcgcaagggt
ctcgactggaccgacaagttcggatcgatcgcaaagcaggcaggtgaattgccggacgcg
ttgatcgacggcgagatcgtcgcgctcgaccacaacggcgcgccggacttttcctcgctg
caggccgctctgtcggacggcaagaccgaagagctgatcttctacgccttcgacctgctg
ttcgccgaaggcctcgactatcgccgtctgccgctcggcgagcgcaagcaacgcctcaag
aaattgctggaggcgcgcaggaagaagacgagccagatccgctatgtcgagcatttcgag
agcggcggcgaggcggtgctgcaatcggcctgcaagctcgagctcgaaggcgtggtgtcg
aagaagctggacgcgccctaccgttcgggccgcaccgagagctggaccaaggcgaaatgc
cgcgccggccacgaggtcgtcatcggcggctacaagaccaccaatggaaaattccgctcc
ctgatggcgggtgtgcatcgggacgatcatctcgccttcgtcggaatcgtcgggaccgga
tttggtgccgacaaggtcaaacgcatcatgccgtcgctgaaggccatggaagccaaggaa
agtcctttcggcggcaagaatgcaccgaagaagacccgcgacgtgcactggctgaagccc
gagctcgtcgccgagatcgagttcgccggatttacagccgatggcaacatccgccaggct
gcgttcaagggactgcggcaggacaagccggccgaggaggtcgaggcggaaacgcccgtg
gataccaagctcgcgcagccttccaccaggaggcgcgcgccggcgcaaccggcgaaagcg
aagggcactgccgaggtcatgggtgtcgtcatctcgaagcccgagaaggagctgtggcct
gacggcggcgatggtgagggcgtgacgaagctcgatctcgcgcgctatttcgaggccgtc
ggcgcctggatgatcgaacatcttaagggccgtccctgctcgatccttcgcgcacccgac
ggcatcgccggcgagaagttcttccagcgccatgcgatgcagggcacgtcgaacctgctc
gagctcgcaaaggtctccggcgatcgcaagccgtatttgcagatcgatcgcgtcgaaggc
ctcgcggcggtcgcacagatcggcggcgtcgagctgcatccctggaattgcgcgcccgac
gcctacgatactccgggccgtctggtgttcgatctcgatccggcgccggatgtgaagttc
gccgctgtcgtcgaagcggcgaaagagatgcggcagcggctcgccgatgtcggcatggag
agcttctgcaagaccaccggcggcaagggcctccacgtggtggtgccgctgcttcacggc
gcgcgcgacaaggtgagttggaaagaggccaaagccttcgcgcaaggcgtctgccagtgg
atggccgatgaggatcccgagcgctacctgctcaacatgtccaagaagctgcgcaacggg
aaaatctttctggactatctgcgcaacgatcgtctgtcgaccgcggtggcgccgctgtca
ccccgtgcgcgtgatggcgcgaccgtgtcgatgccggtcacctgggcgcaggtgaagggc
gatctcgatccgaaaaaatatacggtgcggactgtgcccggcctgctggcgcgatcgaag
gcctgggatggctatgacgatgcggccacgtcgatcaaggcggccatcaagacattggcg
acgaagaagtag
DBGET
integrated database retrieval system