Bradyrhizobium guangzhouense: XH91_17610
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Entry
XH91_17610 CDS
T06161
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgz
Bradyrhizobium guangzhouense
Pathway
bgz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XH91_17610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgz03400
]
XH91_17610 (mfd)
Enzymes [BR:
bgz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XH91_17610 (mfd)
DNA repair and recombination proteins [BR:
bgz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XH91_17610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QAU46995
LinkDB
All DBs
Position
3630048..3633566
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVVSDLARAIAARPKKPAVSLAVVCRDGGRM
QQLERALQFFAPDLPVLTFPAWDCQPYDRVSPHGGILAQRLTTLARLAALTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLEQPVRFDFFGDSLESIRSFDAETQRTLLDMRSLDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAVRERFKQIQDYYEARRDAMEHPGGGAIYKPLPPDRLYLTEEEWGKRERDIPLARLTAF
AVPADGTSVVDAGARKGRDFAPERNDSKVNVFESVVSHVMALQASRKKVVIALWSEGSRD
RMTSMLRDHKLTHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLTAGDIVVHVDHGIGRFIGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQQGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLIPTKELNQVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPTITIGMPVLIPEDYVGDLSVRLSLYRRLADLDSEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRQANVEKIDAGPKGAVITFRDNSFAHPDRLVSFIRSYGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAKSKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagggaatgaaatctccggccgagctgctgacgcccggccgcgcgctgacgctt
gccaacgtcgccgagggcgccgaaggcctcgtcgtctccgatctggcgcgcgcgattgcg
gcgcggccgaagaagccggctgtcagcctcgccgtggtctgccgcgacggcgggcggatg
cagcagcttgagcgcgcgctgcaattctttgcgcccgatctacccgtgctgacctttccc
gcctgggactgccagccctatgaccgcgtctcgccgcatggcggcattctggcgcagcgt
ctgaccacgctggcgcggctcgccgcgctcaccggcagcgacaagccgctgatcgtgctg
acgacggtcaatgccgtcgtgcagcgcgtgccggcgcgcgagctggtcgcggcgcaggcg
ctgtcggttgcacccggcaacgttgtgccgatggacaccatcgtcgcctggctcgagcac
aatggctacaaccgctcgtccaccgtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctcgatctgtttccggcaggcctcgagcagccggtccgcttcgacttcttcggcgac
agcctggaatcgatccgctcgttcgacgccgagacgcagcgcacgctgctcgacatgcgt
tcgctcgatctggtgccgatctcggaatttcagctcgtcaccgacacgatccgccgattc
cgcatgggatatgtcgccgagttcggcgcgcccgagcgcgacgacgcgctgtatgaggcg
gtcagcgagggccgccgccatcccggcatggagcattggctgccgctgttccaggaccgc
atggacacgctgttcgattatctgcaaggcgcggccgttgcgatcgagccgcaggccgag
gacgccgtccgcgagcgcttcaagcagatccaggactattacgaggcccgccgcgatgcc
atggagcatccgggcggcggcgccatctacaagccgctgccgccggaccggctctatctg
accgaggaggagtggggcaagcgcgaacgcgacatcccgctggcgcgattgacggccttc
gcggtgccggccgacggcaccagcgtggtcgatgccggtgcgcgcaagggccgcgacttt
gcgcccgaacgcaacgactccaaggtcaacgtgttcgaatccgtggtcagccacgtgatg
gccttgcaggccagccgcaagaaggtcgtgatcgcgctgtggagcgaaggctcgcgcgac
cgcatgacctcgatgttgcgcgaccacaagctgacgcacaccaccagcgtcaattcctgg
cgcacggtgcaggcgacgccgcgcaacgagaccatgctcgccgtgctcggcctggagagc
ggtttcgagaccgacgagatcgccgtcatcagcgagcaggacattttgggcgaccgcctg
gtgcggccgcgcaaggccagccgcaagctcgacaacttcatctcggaggtgacgagcctc
accgcgggcgacatcgtcgtccacgtcgatcacggcatcggccgcttcatcggcctgcag
acactcgacgtcgccggcgcgccgcatgactgtctcgagctgcattatgctgccgagacc
aagctgttccttcccgtcgagaacatcgagctgttgtcgcgctacggctccgaccagacc
acggtcgagctcgatcgcctcggcggctccggctggcagacccgcaaggccaagctgaag
aaccgcattcgcgagatcgcgggcgagctgatcaagatcgcagccgcacgccatctgcac
gaggcgccgaagctgccggtgcagcaggggctctatgacgagttctgcgcacgttttccc
tatgacgagaccgaggaccagcttggcgccatcgaatccacgctgaaggatctcgagctc
ggccgtcccatggaccgcctgatctgcggcgacgtcggcttcggcaagaccgaggtggcg
ctgcgcgccgcctttgccgtcgcgctggaaggcaagcaggttgcggtggtggtgccgacc
acgctcttggcgcgccagcacgcaaagaccttcaccgaacgtttcaagggctttccggtc
aacgtggcgcaggcctcgcgcctgatcccgaccaaggagctgaaccaggtcaagaagggc
atcgccgacggctctgtcgacatcgtcgtcggcacccacgcgctgctcggcaaggccatc
aaattccgcgatctcggcctcgtcatcgtcgacgaggagcagcactttggcgtcacccac
aaggagcggctgaaggcactccgttccgaggtgcatgtgctgacgctgtcggccaccccg
atcccgcgcacgctgcagctggcgctgaccggcgtgcgcgagctctcgatcattgcttcg
ccgccggtcgaccgtcttgcggtccgcaccttcgttgccccgcatgatccgctgatgatc
cgcgaggcgctcttgcgcgagcgttatcgcggcggccaggcgttttatgtggtgccgcgc
atcgacgacctcgccgaggtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gctgtcgcgcatggccagatgccgcccgctgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgatatcctgctgtcgactacgatcgtggaatccggtctcgacattccc
aacgccaacacgctgatcgtgcatcgtgccgacatgttcggcctcgcgcagctctatcag
ctccgcggccgcgtcggccgttccaagctcagggcctatgcgctgttcacgctgccttcg
cagcagaagatcacggcgcaggccgagcgccggctcaccgtgctgcaatcactggagacg
ctgggcgccggcttccagctcgcctcgcacgatctcgatatcaggggcgccggcaacctg
ctcggcgaagagcagtccggccacatcaaggaggtcggcttcgagctctatcaatcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtatccgagcccgccgccgaccgctgg
tcgccgaccatcaccatcggcatgcccgtgctcattccggaggattacgtcggcgatctc
tcggtgcgactgtcgctctacaggcgccttgccgatctcgacagcgaggaggagatcgag
aactttggtgcagagatgcgcgaccgcttcggcgtgctgcccgacgaggtgcgctatctc
ttcaaggttgccgcgatcaaggcgttctgccgtcaggccaatgtcgagaagatcgatgcc
ggtccgaagggggccgtcatcaccttccgcgacaattccttcgcccatcccgatcgtctc
gtgtcgttcatcaggagttacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcctgcaggattgggagacgccggaagagcgcctcgccggcaccaccgagatcatgcgg
caattggcgcagctcgcaaagagcaagaaggcggcgtag
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