Bacillus haikouensis: KJK41_13505
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Entry
KJK41_13505 CDS
T08945
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bhai
Bacillus haikouensis
Pathway
bhai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KJK41_13505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhai03400
]
KJK41_13505
Enzymes [BR:
bhai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KJK41_13505
DNA repair and recombination proteins [BR:
bhai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KJK41_13505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QWC21344
LinkDB
All DBs
Position
2712982..2714820
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AA seq
612 aa
AA seq
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MRPMLPTLTTEAPNKGKWNYEVKYDGFRGILKIDASGVISLTSRNNKDLLPHFPEIKAYI
TDLLQTASLSLPLVLDGEVAILRSAYCSEFFELQIRGRMKNNQKVKEAAAARPVKFLAFD
LLRSGNERWQDSPYKERKEALKKLFTVEGVPIIPDPANPAALQMIPSYKEWNKVWGGVVK
EEGEGVVAKLVDSNWEEGKRSPAWLKIKNWKKCLCFITSVDVSNDYFHIGVFEGKEIKKI
GLFHFGISPDEKRTLKEIIKANHSRKEDSHYYIDPSICVEVLYLNWHENQLREPHFKQFM
FSTRPEECTMERFLLDEASLPQNVDITHPDKPLWEEPPVTKLDFIRYLRRVSAVMLPFLD
NRPLTCIRYPHGMYGDSFYQKNVPEYAPEYVETYGQDGIEYIICNGLETLIWLGNQLALE
FHVPFQKAGQGDVNEIVFDLDPPSRAEFSLAVKAALVMKDLFEGLNLRSFVKTSGNKGLQ
VYIPLPRGYSWKDTGVFTEFIAHYLVSNYPDDFTIERLKKNRKGRLYVDYIQHAEGKTII
APYSLRGNDKALVAAPLWWHEVNEELTPEKFTMKEVLKRLTKLGCPFREFVRAKDQQPFN
DVITFLNGNAKK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagaccgatgctgccgactctcaccactgaagctccgaacaaaggtaaatggaactat
gaagtaaaatatgatggattcagagggattttaaaaattgatgcttcaggcgtcatttca
ctcaccagcaggaacaacaaagatttactgcctcatttccccgaaataaaagcatacata
acggatttgcttcaaacagcttccctttccctcccactcgttctggatggtgaggtggcc
attctgcgttctgcgtattgcagtgagttctttgaattgcaaatcaggggaaggatgaag
aacaatcaaaaagtcaaagaggcagcagccgcaagaccggtcaaattcttagcgttcgac
ctattgcgaagcgggaatgaacgatggcaggattctccctataaggaacggaaagaggcg
ctaaagaaactttttacagttgaaggcgtccccattattccagatcctgcaaatccggct
gccttgcagatgattccctcttataaagagtggaataaagtatgggggggagtcgtaaaa
gaagaaggtgaaggggtagttgcaaaactagtggacagcaattgggaagaaggaaaacgg
agtccggcatggctaaaaataaaaaactggaaaaaatgcttatgttttatcacttcggtc
gatgtatccaatgattattttcacataggcgtatttgaaggaaaagaaattaagaaaatc
ggattgtttcattttggtatttcacccgatgagaaaaggacgctgaaagaaatcatcaaa
gcaaatcattcccgcaaagaggacagtcattattatatcgacccgtctatatgcgttgag
gttctctatctgaattggcatgaaaatcaattaagggagccgcatttcaaacagttcatg
ttctcaacccggccagaagagtgtacgatggaaagatttttactggatgaagcaagcctt
ccccaaaacgtagacatcacgcacccggacaagcctctttgggaagaacctcctgttacc
aagttagattttatccggtaccttcgccgggtttcagctgtcatgcttcctttcctggat
aaccggccattgacgtgtatccgctacccccatgggatgtatggagactctttttatcaa
aagaatgtccctgaatatgctcctgaatatgtagagacttatggacaggatgggattgaa
tatatcatctgcaatggcttggagactcttatttggcttggaaaccagctggcactggaa
tttcacgtcccttttcagaaagcggggcaaggagatgtcaatgagattgtctttgactta
gatcccccaagcagggcggagttttctctcgcggtgaaggcagcccttgtcatgaaagat
ttgtttgagggactgaacttaaggagctttgttaaaacttcaggaaacaaaggccttcag
gtctatattccgctgccccggggttattcatggaaagacactggggttttcacggaattc
attgctcattaccttgtatccaattatcctgatgatttcacaatcgagaggttaaaaaag
aacaggaaaggccggctgtacgtggattacattcagcatgctgaaggaaaaacgatcatc
gctccttactcattgagagggaacgacaaagccctggtggctgcaccactctggtggcat
gaagtaaatgaagagctgactcctgagaagtttaccatgaaggaagtgttaaagcggtta
acaaagctcggctgtcccttccgcgagttcgtccgtgccaaggatcagcagccctttaat
gatgtgatcacattcctgaatggaaacgccaaaaagtaa
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