Brachyspira hyodysenteriae ATCC 27164: BHYOB78_10995
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Entry
BHYOB78_10995 CDS
T04742
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhd
Brachyspira hyodysenteriae ATCC 27164
Pathway
bhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BHYOB78_10995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhd03400
]
BHYOB78_10995
Enzymes [BR:
bhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHYOB78_10995
DNA repair and recombination proteins [BR:
bhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BHYOB78_10995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
Fer4_20
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANN64377
UniProt:
A0A3B6VTY2
LinkDB
All DBs
Position
2146171..2149914
Genome browser
AA seq
1247 aa
AA seq
DB search
MHNNESIYSELIERFSKSEEFLNFDIKTVKSLTGLKGGSDSLFFASLFNKNESILIIKEN
ESDAMLLSQSLNFYNIPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITT
VNAVTRKLPNRDDLKKLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIV
DIFSVEYNNPIRIELFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFLN
NNEIEDELKDNIIKRKYFAGSENLLPIFYKDLETIFDYFDYGYVFIDDALKLKNKFISII
DTIKENFNDIDNMFTIIEDIYKLYIDNNYFSEIVKKAINISPFITDIDIYKFHFEEGISF
KSRLTDFLDYVKEYREKDYLIILSTGHNDQALRFYKIMQDLSPTIITENDIEDTEDIKDK
EENSDNKEINNDIKENDDNNEDNKEIILEDTNKKEEIKKDYSKNENNFYIITAQSSSGFI
KDDIKTIFIADWEVFGRKRKKVRKIPKVNKNLIETFVDLNVGDYAVHVNYGIGKYLGLTR
KMSNGKEKDYITLEYAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAR
EDALATARELIKLYAIRSNIRGNVYGPDTQWQDDFEASFRYEETVDQLRAINDIKDDMES
GKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFEDFPI
KIEVLNRFVTSKQAKRNKELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKH
KEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAV
VNAIERELKREGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFI
NHKYDILVSTTIIENGIDIPNANTILIDNANKLGLSELYQLRGRVGRSDREAYAYMFYPS
DLALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELYTQM
LEEAANEYKGEIKEVTFDTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQSDEDIEYSK
EFMIDKYGKLPKELEDIFDIAKVKIILKRMRILSVIEGHYNIYLKLDKLSKIDTDKLINL
INTKNSGVYFDKDNLNQLIIPVIHEKENDIEWKLEKIRNVILAIESENYTADTDSKNENN
ESNTNKEDNKKENSKMSIAEANLKNNKTNKKRTISRKSPKLIKVNKK
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgcataataatgaatcaatatatagtgaattaatagaaagattttcaaaaagcgaagaa
tttttaaatttcgatattaaaacagttaaaagtttaacaggactaaaaggcggaagtgat
tctttattttttgcttctcttttcaataaaaatgaaagtattttaataattaaagaaaat
gaaagcgatgctatgcttctaagccagtctttaaatttttataatatacctaattactat
tttcctgattatgatacagttccttttaccaaaatgtcgcctgttagtgatatagcacag
gatagaataaatattttatataaattaataaataaagaaaaatgtataataataacaact
gtaaatgctgtaactagaaaattacctaatagagatgatttgaaaaaactgcctatacat
ttaaatgtaggcgataaattggatttggataatttaagattaacattatacgatttggga
tatgttatagaaagagaagttgctgaaaaaggtacggcttctgttagaggaagtatagta
gatatattttctgttgaatataataaccctattagaatagaattatttgatgatgaaata
gaaagcataagattatttaatatagaagacggaagatcttttaaaagtgtagaaaatata
atcatttatcctgtaagagaaactatttacagtgattcggcggtgagtgaatttctaaat
aataatgaaatcgaagatgaacttaaagacaatataataaaaagaaagtatttcgccgga
agtgaaaatttactgcctattttttataaagatttagaaactatatttgattattttgat
tatggttatgtattcattgatgatgctttaaaattaaaaaataaatttattagtataata
gacactataaaagaaaatttcaatgatatagataatatgtttactataatagaagatatt
tataaactatatatagacaataattatttttctgaaatagtaaaaaaagcaataaatatt
tcccctttcataacagatatagatatatataaatttcattttgaagaaggtatttctttt
aaatccagattaacagattttcttgattatgttaaagaatatagagaaaaagattattta
atcattctatctacaggacataatgatcaggcattgagattttataagataatgcaggat
ttatctcctactattataactgaaaatgatattgaagatacagaagatattaaagataag
gaagaaaattctgataataaagaaataaacaatgatattaaagaaaacgatgataataat
gaagataataaagagataattcttgaagatactaataaaaaagaagaaataaaaaaagat
tattcaaaaaatgaaaataatttttatataataacagcacaatcatcatctggcttcata
aaagatgatataaaaacaatattcatagcagactgggaagtattcggaagaaaaagaaaa
aaggtaagaaagatacctaaagtcaataaaaacttaatagaaacatttgtagatttgaat
gtaggagattatgctgttcatgtcaattatggtataggaaagtatttaggtcttacaaga
aaaatgtccaatggaaaagaaaaagactatataacattggaatatgccaaaggagataaa
ctttatatacctgtagaacagatgaacttcgtgcagaaatatatatcagggcatggtgaa
gctcctaaattaactcagttaggcggaagtgcttgggataaaataaagagcaaggcaaga
gaagatgcattagctactgcaagggaattaataaaactttatgctataagatctaatatc
agaggaaatgtttatgggcctgacactcaatggcaggacgattttgaagcttcgtttcgt
tatgaggaaactgttgatcagttaagggctattaatgatataaaagatgatatggaaagc
ggaaagatgatggatagacttgtatgcggtgatgttggatttggaaaaacagaagtggca
ttcagagctgtatttaaagctataatggcaggaaagcaatgtgctatattatgccctact
acaatattatcacaacagcattataataacgctaaaaaaagatttgaagattttcctata
aaaatagaagttttaaatagattcgttacaagcaaacaagcaaaaagaaataaagaatta
ttaaaagaaggttcatgcgatttgatagtaggaactcatatgcttttatcaaaagatata
gagtttaaaaatctaggacttatagttatagacgaagagcaaagattcggagttaagcat
aaagaggcattaaaaaaattaagattagaaactgatgttcttactctttcagctactcct
atacctagaactttaaatatggctttaacaggaataagagatataagcataatagaaact
cctccattaaatagaatacctgtaaaaactttcgttactgagttcagcgaagatgctgtt
gtaaatgctatagagagagaattgaaaagagaaggacaagtattctatctttataacaga
atagatactatagaatcattcgcacttatgataaaaaaactttgtcctaaagcaagaata
tgcgttgcccatggaagaatgacaggacatcagcttgaaaaaataatgggcgattttatt
aaccataaatatgatatattagtatcaactacaataatagaaaatggaatagatatacct
aatgccaataccatactaatagataatgcaaataaattaggattatccgaactttatcaa
ttaagaggaagagttggaagaagcgacagagaggcttatgcttatatgttctatcctagt
gatttagcattaacagaagttgcatataaaagacttgaagctatatccgagcatactgat
ttaggggcaggattcaaaatagctatgcgtgatttagaaataagaggagctggaaatatt
ttaggcaaagagcaatccggtatgatatatcaggttggctatgaattatatactcaaatg
cttgaagaagctgcaaatgaatataaaggtgaaataaaagaagtaacattcgatacagtt
atagacttaaaacataatttatttattcctgattcttatatagcagattcaaaagaaaaa
atatccgcttataaattaataatgcgttctcaaagcgatgaagatattgaatattctaaa
gagtttatgattgataaatatggaaaacttccgaaagaattggaagatatttttgatata
gcaaaagtaaaaatcatattaaaaagaatgagaatattatctgttatagaagggcattac
aatatatatcttaaacttgataaactttcaaaaatagatactgataaacttataaattta
atcaatacaaaaaattcaggagtttattttgataaggataatcttaatcaattaataata
ccggttatacatgaaaaagaaaatgatattgaatggaaattagaaaaaataagaaatgtt
attctggcaatagaaagtgaaaattatacagcagatactgattctaaaaatgaaaataat
gaaagcaatacaaataaagaagataataaaaaagaaaactctaaaatgagcatagcagaa
gctaatctaaaaaataataaaacaaataaaaaaagaacaatatcaagaaaatctcccaaa
ttaataaaagtaaataaaaaataa
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