Bacteroides heparinolyticus: C3V43_05080
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Entry
C3V43_05080 CDS
T05405
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhf
Bacteroides heparinolyticus
Pathway
bhf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3V43_05080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhf03400
]
C3V43_05080 (mfd)
Enzymes [BR:
bhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3V43_05080 (mfd)
DNA repair and recombination proteins [BR:
bhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3V43_05080 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVM58931
UniProt:
A0A2R3MVC8
LinkDB
All DBs
Position
complement(1230857..1234252)
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AA seq
1131 aa
AA seq
DB search
MTITELQHLYAAHPNVEGMSRLLENSSVRHLYCGGLCASAASLFSSVLVERRMAPFVFIL
GDLEEAGYFYHDLTQILGAGRVLFFPSSFRRAIKYGQRDAANEILRTEVLSRLQKKEEDF
CVVTYPDALAEKVVSRQELDEKTLKLNAGERVDMGFITEVLRSYGFEYADYVYEPGQYAV
RGSIIDVFSFSSEFPFRIDFFGDEVESIRTFEVETQLSKERKQSIVIVPDLSRGPEHGGS
NGMVSFLDFLPADAVLAMRDFLWLRERIQSVHDEALSPQAIFAREAEEDGTVAPEGCLIE
GGEFTLRALDFRRMEFGSKPTGTPDAVLTFDTSAQPIFHKNFDLAADSFKEYLKNGYTLY
ICSDSSKQTDRIRAIFDDRGDNVAFTAVERTLHEGFADNVLRLCVFTDHQLFDRFHKYNL
KSDKARSGKVALSLKELNQFASGDYVVHTDHGVGRFAGLVRIPNGDTTQEVIKLVYQNDD
VVFVSIHSLHKVSKYKGKEGESPRLNKLGTGAWEKLKNRTKTKIKDIARDLIKLYSQRRE
EKGFCYSPDSFLQRELEASFIYEDTPDQSKATADVKADMESGRPMDRLVCGDVGFGKTEV
AVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQTKTIVK
GLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTAT
PIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEVIADAVGFEMSRNGQVFFVNN
RISNLPELKAMIERRIPDCRVCIGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDI
PNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFS
DLGSGIHIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFAHLYAD
GPEADGAAAISGDRFVDECQVESDLELLLPADYVTGSSERMLLYRELDGLTLDTEAEAFR
SRLEDRFGPVPPETEELLRIVSLRRLAVRLGVEKVFLKGGRMSMFFVSNPDSPYFQSQAF
GKMIAYMMKYTRRCDLREQNNKRSMSVKDVSSVEEAVSVLQEIVATPAEEE
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgactatcaccgaactgcaacatctttatgcagcccatcccaatgtagaggggatgagc
agactacttgaaaactcttctgtccgacatctgtattgcggaggcttgtgcgcttctgcg
gcttcgcttttctcgtccgtactggtagagcggaggatggctccgtttgtctttattctg
ggcgatttggaagaagcgggttatttctatcacgacctgacgcagatactgggtgcgggg
cgagtcttgttctttccatcgtcttttcgccgggccatcaagtacggacagagagacgcg
gcgaacgagatactgcgcacggaagtcctgagccggttgcagaaaaaggaagaagatttt
tgcgtggtcacttatccggatgctttggccgagaaggtggtttcgcgtcaggaactggat
gagaaaactttgaagctgaacgccggcgagcgggtggacatgggcttcatcaccgaggtg
ttgcgcagctatggtttcgagtatgcggactatgtctacgaacccggacaatatgccgtg
cgaggcagcattatcgatgtcttctctttctcctcggagtttcctttccgtatagacttc
ttcggagacgaggtggaaagcatccgcaccttcgaggtagaaacgcagctctccaaggaa
agaaaacagagcattgtgatagtgcccgacctgagccgtggtccggagcatggcggcagc
aacggcatggtgtcgtttctcgattttctcccggccgatgccgtgttggccatgcgcgat
ttcctttggttgcgcgagcgcatacagtccgtgcacgacgaggcactctctccgcaagcc
atctttgcccgcgaggcggaagaggacgggacggtcgcgccggaaggctgtttgatagag
ggaggcgaatttacgttgcgtgcgctcgatttccgccggatggagttcggaagcaagccc
accggtacgcctgatgccgtgctgactttcgatacctccgcccagcccatctttcataag
aacttcgacttggcggccgattcgttcaaggagtatctgaaaaacggctataccttatat
atatgtagcgacagcagcaagcagaccgaccgcatccgtgccatctttgacgaccgggga
gacaatgtcgcctttactgccgtggagcgcacgctgcacgaggggtttgccgacaacgtg
ctgcgcctctgcgttttcaccgaccaccaactgttcgaccgttttcataagtataacctg
aagagcgacaaggctcgtagcggaaaagtggccctctctctgaaagaactgaaccagttc
gcttcgggagattacgtggtgcataccgaccacggcgtgggacgttttgccggactggtg
cgcatccccaacggcgacactacgcaagaggtgataaagctggtttatcagaatgacgat
gtggtgttcgtttccatccattccctgcataaagtctccaagtacaagggcaaggagggg
gaatcgccccgcctgaacaagctcggaaccggagcttgggagaaactgaagaaccgcacg
aagacaaaaatcaaagacattgcccgcgacctgattaagctctattcgcaacgccgcgag
gagaaaggcttctgctacagcccggacagcttcctgcaacgggagctggaggcgtctttt
atctacgaggacacgcccgaccagagcaaggccacggctgatgtaaaggccgacatggag
agcggccgcccgatggaccgtctggtgtgcggcgatgtggggttcggaaagacggaggtg
gctgtgcgcgccgctttcaaggccgtggccgacaacaagcaggtggcagtgctggttccc
accaccgtgttggcctaccagcatttccaaaccttcagggagcgcctgaaaggattgcct
tgccgggtggaatatttgagccgtgcccgtacggccgctcaaaccaagaccatcgtcaag
gggctggccgagggagaggtgaacattcttatcggcactcaccgcatcttggggaaggac
gtgaagttcaaagacctcggactgctgattatcgacgaagagcagaagttcggcgtatcg
gtcaaagagaagctgcggcaactgaaggtgaatgtggatacgctgaccatgaccgctaca
cccattccccgcaccttgcagttctcgctgatgggggcacgagacttgagcgtcatacag
acgcctccccccaaccgctatcccattcagacggaagtgcacaccttcaacgaagaggtc
atcgccgatgccgtcggcttcgagatgagccgcaacgggcaggtgttctttgtcaacaac
cgcatctccaacctgccggagttgaaagcgatgatagaacgccgcattcccgactgccgc
gtctgcatcgggcacgggcagatggagccggccgaactggagaagattatattcgacttc
gtcaactacgactacgacgtgttgctggccaccaccatcatagagagcggcatcgacatc
cccaacgccaacaccatcatcatcaatcaggcgcagaacttcggcctgagcgatttgcac
cagatgcgcggacgggtggggcgaagcaacaagaaggctttctgttacctgctggcgcct
cctctgtcgtccctgacgccggaggcgaagcgacgactgcaggccatcgagaacttctcc
gatctgggcagcggcatccacatcgccatgcaggacctcgacatccgcggggcgggcaac
atgctgggggccgagcaaagcggtttcattgccgacttggggtatgagacttaccagaag
atactctccgaggccgtgcatgagttgaagaccgatgagtttgcccacctttatgccgac
gggccggaagcggatggagccgccgccatcagtggcgaccgctttgtggacgagtgtcag
gtggagagcgacctcgagctgttgttgcctgccgactacgttacgggcagcagcgagcgc
atgctgctctatcgcgagctggacgggctgacgctcgatacggaagcggaagcctttcgc
agccgcctcgaagaccgcttcggcccggttcctcccgaaacggaagaactcttgcgcatc
gtgtcgctccgccgtcttgccgtacgtcttggcgttgagaaggtgttcctgaaggggggc
aggatgtcgatgttcttcgtctccaatccggatagcccgtacttccaaagccaggcattc
ggcaagatgattgcctatatgatgaaatatacccgtcgctgcgacttgcgcgagcagaac
aacaagcgcagcatgtcggtgaaggacgtgagcagcgtggaagaggcagtctcggtgctt
caggagattgtggcaacgccggccgaagaggagtga
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