Benincasa hispida (wax gourd): 120073725
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Entry
120073725 CDS
T07258
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03022
Basal transcription factors
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120073725
09124 Replication and repair
03420 Nucleotide excision repair
120073725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120073725
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120073725
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120073725
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120073725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
120073725
NCBI-ProteinID:
XP_038882460
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All DBs
Position
3:8505003..8513269
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AA seq
451 aa
AA seq
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MPQVKIIAKNFMDMVASLPPMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA
KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPMFQANLQKLLIHGEVL
AREPMPANITVRLPSLEELKAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE
AYDIDTLTDEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL
QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
NGLLWEDLKNMRLVVKADIHTHMREHLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtaaagatcatagcgaagaattttatggacatggtggcctccttgcccccc
atgaagcttgatcaactctatgagaatgcattcatctgcgaagccattctcaggtcactt
ccaccactcgctaagaagtttgttttacaaatgttatacattgatgctccagtttcagcc
aagtccatggaggagtgggtgctcccagatggagtctcgaagtataaggttgctgttgat
cgattgattcaattgagagtatttattgagactgcggataggaaaagagaaacaacctac
aggctaaatccaatgttccaagcaaacctccaaaagcttttaatacatggtgaagttcta
gccagagaaccaatgcctgctaatataaccgtgaggcttccaagtttagaagaacttaag
gcttatgctctggatcagtgggagtgcttcttgctgcaattgataaactccggccaagca
gagaagccatcaaatattagttcttctgtgatgaaagttttccagaaaggccttttaagt
cagagggataaagaagctccacgattaactgagagtggtttccagttcttgttgatggaa
acaaatgcacaactttggtatatcatcagagaatatatatctaacgctgaggaacgaggt
gtggatcctgcagatttgatttcttttcttctagagctcagttttcacgtgacaggagag
gcttatgatattgatacactgacagatgaacagaggtatgctatcaaggaccttgctgat
ctgggactagttaagcttcagcagggtagaaaagacagttggttcatacctactaaatta
gccacaaatctttcaatgagtttggcagattcttcttcaaggaaacagggatttgttgtc
gtggagacaaatttcaggatgtatgcttattcttcttccaaactacattgtgaaatatta
cgtctcttttcgaggatcgagtatcaacttccaaatcttatagttggagcaataacgaaa
gaaagcttgtataatgcttttaagaatgggattacggcagagcagatagttacttttcta
cagcagaatgcacatcctcgtgttgcagagagaataccatcagtccctgaaaatgtcaca
gatcagattaggttatgggaatcagatcttaatagggttgatattactcccgcacatttt
tacgacgaatttccttccagggaagtttttgaggctgcgtgcgactatgcacgggaatgg
aatgggttgctatgggaggatttgaaaaacatgcgactggtagtgaaggcagacatacac
acgcatatgcgggaacatcttcggcgtcaaaagtag
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