Benincasa hispida (wax gourd): 120079002
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Entry
120079002 CDS
T07258
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120079002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120079002
Enzymes [BR:
bhj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120079002
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120079002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
PRF
Motif
Other DBs
NCBI-GeneID:
120079002
NCBI-ProteinID:
XP_038889084
LinkDB
All DBs
Position
6:complement(35293735..35337453)
Genome browser
AA seq
1230 aa
AA seq
DB search
MSEPIKFGVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCTPADYFSAIRLILPNLDRERGT
YGLKESVLATCLIDALGMSRESDDARRLINWRKGGAKTGANAGNFALVAAEVLQRRQGMT
PGGLTIKELNDLLDRLASGENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK
KLHGKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLDHSEYGHGMSDVVVHNVLSTRCILD
GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH
ELLRDVVKPVKGQLEILVPNGGLNSDCAGYPSWSIRAYNVDDVEKFFKSTIENRDEGIVI
KDLGSKWEPGDRSGKWLKLKPDYVRAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERPP
SNGYPRRFISFCRVGTGLTDEELDAVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERPDV
WIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRLDKPWHECLDVQSFVELVHS
SNGTTQRGTNNSGWQDSKRKYIKSTGKGRKKSVSIVPSHLLQTDITGITEDSLIFSNMLF
YIVNVPPSHSLDSLHKLIVENGGTFSMNLNNSVTHSIAADSKGIKYEAAKRHGDVIHYSW
VLECCSQKKLLPLKPKHFLFLSGHSKKKLEEEIDEFSDSYFWDLELSDLKQLLSNVSRSE
DVKAIDYYRGKYCPKREWCMFVGCQIYFLPLRLYLKSDWGVLLELSVRRLKVEVSFRGGK
VSDDHVSATHIVVFSIPGAPVRYETVLKSCDEAEKHAMLKDKIHIVTHQWLEDCLERAQR
LQEDAYSLNPNGKKSIDNINSGMDFEMPSASENIDNQQIPSPSQEYKDQGRNEAASGQHT
LSYSTERSGGKKRRRPAARSMQKGKSGVKQVREFRTRTAKGPAKISEVESDNSDYTDEKT
NAETRNVGTLCSETSEKNEFKTLENEISNTKKRGRPTAGNTQKGKAGAKAVRRTRARITK
GSAKIGDIESGSNDSTDEKTNTDELRKEKEENSKRDEFKMLIDHDPKQKGKAIEENVRAD
FGSNVDFGKVPEVGISERYDFKDVEKCEKLEIMKDPLEAMLLDMVPSLGMSGSKSSSTVV
EEKKPVNSNSEPAKKKVSYKDVASELLKDW
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaccgatcaagttcggtgtgctttcaagtttgtttgattggattcagcgaagc
aaatcttccgccaagaagcgttccaagttccgtaagtttctcgacactttctgcactcct
gctgactatttttccgctatccgcttgattcttcccaaccttgatcgagagcgcggcacc
tatggcctcaaggagtctgtactcgccacttgccttattgacgctcttggcatgtctaga
gagtctgatgacgctcgtcgtcttatcaactggcgtaaaggtggtgctaagactggtgct
aatgctggtaatttcgctctcgttgcggctgaggtattgcagcgcaggcaaggaatgacc
cctggtggtttaacaattaaagagttgaatgatttgctagaccgtttggcttcaggtgaa
aacagagcagagaaaaccgcagttctgtctactcttatacagaagacaaatgcacaggaa
atgaaatggatagtcatgataatcctcaaagatctgaaactgggagtcagtgaaaaaagc
atttttcatgagtttcatccagatgcagaagacttattcaatgttacctgtgacttaaaa
ttggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacattgaagtt
ggaaaagctgtacgaccccagctggcttcaagagtgtccaatgcaaatgctgcatggaaa
aagcttcatgggaaggaagttgtagctgaatgcaagtttgatggtgaccgtattcaaatt
cataagaatggaactgaagtacactacttttccaggaactttctcgatcactcagaatat
ggacatggaatgtctgatgttgttgttcataatgttctttccactaggtgcatacttgat
ggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctcaaaccag
gaaatagcgagggcagcaaaggatggatttgacagcaatcgtcagttatgctatgttgca
tttgatgttctttatgttggagatactagtgttattcacaggagtctgaaagaaagacat
gagcttctcagggatgttgtcaagcctgtgaagggtcaattggaaatcttagtacctaat
ggtggtcttaatagtgactgtgctgggtatccttcttggtcaatcagagcttataatgtt
gatgacgtggaaaagttctttaagagtaccattgaaaatagagatgaaggtattgttatt
aaggacctgggttctaaatgggaacctggtgatcgtagtggaaagtggttaaaattaaag
cctgactatgttcgtgctggatctgatttggatgccctcatcataggaggttactacggc
tctggacggcggggtggggaggtcgctcaatttttaatgggtcttgctgagcgtccaccc
tcaaatggatatcccagacggtttatttccttctgcagagtaggaactggacttactgat
gaggagttagatgctgttgtaaataaactgaagccttattttaggaaaagtgaatatcca
aggaagactgcgcccagcttttaccaagttacaaataattcaaaagaaagaccagacgtt
tggattgaaagccctgagaaatcaatcattctttccattaccagtgatatacgaactata
aaatctgaggtctttgcagcaccatatagtctcagatttccacgcatagaccgtgttcga
cttgacaaaccttggcatgaatgtcttgatgttcaatcttttgtggagctggttcattca
agtaatggtaccacacaaaggggcacaaataatagtggttggcaagatagtaaacggaag
tacattaagtccactggaaagggaaggaaaaagagcgtttctattgttccttctcattta
cttcagactgatattacaggcattacagaggactccttgattttctcaaatatgttattt
tacattgttaatgtgcctccatcccattctctcgattccttgcacaaattgatagtggag
aatgggggtacattctctatgaatttgaataactctgttacacactctattgcagctgat
agcaaaggcatcaaatatgaagctgccaaacgtcatggagatgttattcattattcttgg
gtattggaatgttgttcccaaaagaaactgctacctctaaagcctaagcattttctcttt
ctctctggtcactcgaagaaaaaattggaggaggaaattgatgaattttctgactcatac
ttctgggatcttgaactttcagacctgaaacagctcttaagcaacgttagtagatcagaa
gatgtgaaagctattgactactatagggggaaatattgtccaaaacgtgaatggtgtatg
tttgttgggtgccaaatttactttcttccgttaagattatatttaaaatctgattgggga
gttctgttggagctctcagtaaggcggttgaaggttgaagtttccttcagaggtggaaaa
gtcagtgatgaccatgtttctgctacccacattgtagtcttctctattcctggagcgcct
gtaagatatgaaacagtattaaaaagttgcgatgaagcagagaaacatgccatgttgaaa
gataagattcatattgttacacatcagtggttggaagactgtttggagagggcccaaagg
ttgcaagaagatgcatatagcttgaatcccaatgggaaaaagtcgattgacaatataaat
tctggcatggattttgagatgccatcggcctcggaaaatatagacaatcagcaaattccc
tctccttcccaggagtacaaggatcaaggacgaaatgaagctgcttcaggacaacacaca
ctctcatattcaaccgagagatctggtggaaagaaaagaagaaggcctgctgcaaggagc
atgcagaaagggaaatcaggtgtcaaacaggttcgagaatttcggacccgaacagccaag
gggcctgcaaaaataagtgaagttgagtcagacaacagtgactataccgatgaaaaaaca
aatgccgaaactagaaatgttggaacattatgcagtgaaacctcagaaaagaacgagttt
aaaacgctagaaaatgagatatctaacacgaagaaacgaggaagacctactgcagggaac
acacagaaagggaaagcaggggccaaagcagttcgaagaactcgggcacgtattaccaag
ggatctgcaaaaataggtgatattgagtcaggcagcaatgactctactgacgaaaaaaca
aacacagacgaacttagaaaggagaaagaggaaaactcgaaaagggatgagtttaaaatg
ctaatagaccacgacccaaagcaaaaaggcaaagccattgaagaaaatgttcgtgcagat
ttcggatctaatgttgactttggaaaagttccggaagttggtatatctgaaaggtatgat
ttcaaagacgtggaaaaatgtgagaagcttgaaatcatgaaggatccacttgaagccatg
ttattagatatggttccaagtcttggaatgagcggaagtaaaagtagtagtactgttgtt
gaggagaagaaacctgtaaatagcaattctgagccagctaagaagaaagtgagctacaag
gatgttgccagtgaactgctcaaggattggtaa
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