Benincasa hispida (wax gourd): 120086114
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Entry
120086114 CDS
T07258
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120086114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120086114
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120086114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_17
TPR_11
TPR_1
TPR_14
TPR_8
TPR_19
TPR_9
TPR_12
TPR_7
BTAD
TPR_10
SNAP
Motif
Other DBs
NCBI-GeneID:
120086114
NCBI-ProteinID:
XP_038898487
LinkDB
All DBs
Position
9:73828258..73866009
Genome browser
AA seq
1212 aa
AA seq
DB search
MEEVAVKKEHEGESETPCITARQLEEAVDAYPDDPSSHFKLGIFMWENGGSHDKAAAADH
FLKSAKLDPRNAAAFKYLGHYYATFSVDIERALKCYQRAVSLDVDDFHSGEALCDLLHHE
GKESLEIAVCKEASSESPRAFWAFRRLGYLQVYQKKWTEAVLSLQHAIRGYPHCADLWEA
LGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLFKKGVEHFQQALEKSP
KSITAQFGLSSGLLGLAKEYINRGAFKWASFLLEEASKVAKGSTHLAGNSSCIWKLLGDI
QSSYEHPYLLRATVPDSHQCVRRLKHTYAKCYPWMEEDWEQCSESFRTSILAWKQTRCLA
LFSAKCSYQQALHLAPWEANIYTDIAITLDIISSLNDDSGSGFNSWQISEKMTLGALMLE
GDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYWNRGEKQLARQAFDY
ARSIDPSLALPWAGMSADLNIRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLS
SPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAYLTISHFSDRVPRSH
VRDISINLARSLCMVGNFFEALQECENLSKEGMLDIEGLQVYAFSLWKLGKNDQALSTVR
TLASGISTMESTRAAASVGFICRLLCSISGLDSAINSIMKMPTNFFQSSKMSFVVAAVHA
LDRCDRLESIVLSSRSSLQSHEDITRMHVLIALSKLIKYQTNNCLGFLNGVMHLRKALHA
YPNSSLIRNLLGYLLLSNKERDDIHTATRCCNMVYGFDQQNKGLKSAYEIHGAGAVACYT
IGTSDPRFSFPTCSYQCQSGIGTIRQLQKCLRQEPWNYDARYLLILNILQKAREERFPCH
LRVTIERLILVAFSNELYFKKDTSHQYKKFQLLLCASEISLQGGGQIKCINYAKAASSIS
LPEIYLFYAHLLLCRAYAAENDSNNLRKEFMKCVDLKTDNYLGWACLKFIAYGYELHDES
SLLEHSFKKCSVESKNLQHMRIPTFTLVDGLISFRSQDFVAAEKYFAQACSFGHDDGCLL
LCHGVTCMELAKQLCSSHFLRLAVDSLLKAQVISVVPIPIVSITLAQAEGSLGLKENWES
GLRFEWFSWPPDMRSAELLFQMHLLAKQSKVGSDQSRVELCQSPLRWVLRAIHVNPSCMR
YWKVLQSLWNEG
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagttgcggtaaaaaaagaacatgaaggagaatcggagaccccttgtattaca
gcaagacaattggaagaagcagttgacgcttatccagatgatccctcatcccatttcaaa
ctcgggattttcatgtgggaaaatggaggaagccacgataaggcggctgccgcggatcat
tttctgaaatcagcgaaattagatcctaggaatgctgccgctttcaaatatctcgggcat
tattacgccacattttctgtcgatattgaaagggctctcaagtgctaccaaagagctgtc
agtctcgatgtcgacgatttccattctggagaagccttgtgcgatctgttgcatcacgaa
ggaaaggagagtttagagattgctgtatgcaaagaggcttcctctgagtcacccagggcc
ttctgggctttccggaggttgggctatttgcaggtttatcaaaagaaatggactgaagct
gtcttaagtcttcagcatgcaattcgaggatatcctcattgtgctgatttatgggaagcc
ctgggtcttgcatatcagcgacttggcaggtttactgctgcaattaagtcttatgcacgg
gcgattgaaattgaaggagatagaattctcgcttgggttgagagtggaaacatcttcttg
atgcttggtttgttcaaaaagggagttgaacactttcagcaagctctagagaaatcacct
aaaagtattactgcacaatttgggctctcctcagggcttcttggtttggcaaaggagtac
attaataggggggcatttaaatgggcatccttcctattagaggaagcatctaaagttgca
aaaggaagtactcatttagctggaaactcatcgtgtatctggaagttgcttggagatatt
cagagttcttatgaacacccctaccttttaagggctacagttcccgattcccaccaatgc
gttcgaaggctcaagcatacgtatgcgaaatgttatccatggatggaagaggactgggaa
caatgctcagaatcctttagaacttctatccttgcctggaagcagacccgctgtttggct
ttattttctgccaaatgttcctatcagcaagctctgcacttggctccgtgggaagctaac
atttacacagatattgctattactttagatattatttcatctttgaatgatgattctggg
tctggattcaattcctggcagatatctgaaaagatgacattaggggccttgatgctcgag
ggtgacaatcatgaattttgggtggcaatgggatgcatctctaaccatgatgcgttaaag
caacatgcttttattagggcattgcagttagatggatctctagctggagcctgggcttat
ctagggaagttatactggaataggggcgagaagcaattggcaagacaggcttttgattat
gccagaagtatagacccttctctagcgttaccctgggctggcatgtcggctgatttgaac
attagggagtccacatcggatgaagcatttgagagctgtttaagagctgcacaaatacta
cccgtggcggaattccaaattggtcttgccaagctttctttgcaggcaggccatctttca
tctccacaggtgtttggagccatacgtcaggccgttcaacttgccccttgttaccctgaa
tcctataatctaaatggactagcttttgaggcacaattagattatcagtctgctgttgct
gcttatcgtttagcatacctcacaattagccatttctcagatagagttccaaggtctcat
gtcagagacatatcgatcaacttagccagatcactgtgcatggtaggaaatttctttgaa
gctttgcaggaatgtgaaaatttgagtaaagaaggcatgctcgacattgaaggtttgcag
gtttatgctttctctctgtggaaactaggaaagaatgaccaggcccttagcactgtgaga
acacttgcttctggcatttctaccatggaaagcacacgtgctgctgcttctgttggtttc
atatgcagactgttgtgttcaatatctggattggattccgcaattaacagtatcatgaag
atgccaaccaattttttccagagttcaaaaatgagctttgtagtggctgctgtccatgcc
cttgatcgttgtgatcggcttgagtccattgttttaagcagccgttccagtctccaatct
catgaagatattactagaatgcacgttttgattgctctttctaagctgatcaaatatcaa
acaaataactgcctgggattcctcaatggagtgatgcatcttagaaaagctctccatgca
taccccaacagtagtttgatcaggaacttgcttggttatcttttgctatccaacaaagaa
agggatgacattcacacagctactaggtgctgcaacatggtttatggttttgaccaacag
aacaaaggtctgaaatctgcatatgaaattcatggtgctggagctgtggcctgctataca
attggcacgagtgatccgaggttttctttcccaacgtgttcataccagtgccagagtggg
attgggaccatccgacaacttcagaaatgcttacgtcaagaaccatggaattatgatgct
cgatatcttcttatactaaacattctgcagaaggcacgtgaagaaagatttccctgtcat
ctacgcgtaactattgagcggctaatcttggttgccttctctaatgaactgtattttaag
aaagatacatctcatcaatataagaagtttcagcttctactttgtgcgtctgagatcagt
ttgcaaggcggtggccaaattaaatgcatcaactatgccaaagctgcttcctctatttca
cttcctgaaatatatcttttttatgcacacttgttactttgccgagcctatgctgcagaa
aatgattctaacaacctccgtaaagagttcatgaaatgtgtggatttaaagacagataac
tatcttggatgggcatgtcttaaatttattgcatatggatatgaacttcatgatgaatcc
agtctcttagaacacagttttaagaaatgctcggtagagagcaagaatctgcagcacatg
cgaatacccacatttactctggtcgatggtttgatatcttttaggagccaggattttgtg
gctgctgagaagtattttgcacaagcttgttctttcggacatgacgatggctgtctcctc
ctctgtcatggtgtaacctgcatggaacttgcaaagcagctttgcagttctcatttcttg
aggctggctgtggacagtctccttaaagcccaagtaatttctgttgttccaataccaatt
gtctctatcacactggcacaagcagaagggagtcttggtttgaaagaaaattgggagtcg
ggccttcgttttgaatggttctcatggccaccagatatgaggtctgcggagctcttgttt
caaatgcatctgcttgcaaaacagtcaaaagttggttctgatcaatcgagggttgagtta
tgtcagtctcccctgagatgggttcttcgcgcaattcatgtaaacccttcttgtatgaga
tattggaaggtgctgcaaagcttgtggaatgagggctga
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integrated database retrieval system
