KEGG   Benincasa hispida (wax gourd): 120088004
Entry
120088004         CDS       T07258                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03030  DNA replication
bhj03410  Base excision repair
bhj03420  Nucleotide excision repair
bhj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120088004
   03410 Base excision repair
    120088004
   03420 Nucleotide excision repair
    120088004
   03430 Mismatch repair
    120088004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bhj03032]
    120088004
   03400 DNA repair and recombination proteins [BR:bhj03400]
    120088004
Enzymes [BR:bhj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     120088004
    6.5.1.6  DNA ligase (ATP or NAD+)
     120088004
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     120088004
DNA replication proteins [BR:bhj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    120088004
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     120088004
DNA repair and recombination proteins [BR:bhj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     120088004
   NER (nucleotide excision repair)
    Other NER factors
     120088004
   MMR (mismatch excision repair)
    Other MMR factors
     120088004
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 120088004
NCBI-ProteinID: XP_038900958
LinkDB
Position
10:2998503..3019856
AA seq 804 aa
MLSLRSCYYLRPITLPHPQFKKLIFFNKPPSFKPIFQNFVSSMSSRPSAFDALMSGARAA
AKKKPVNSSPKKRKALDSLDPPPKPSSSVALESTPAVESQCGSSIANLDNHGGTHLVKSE
DAADLGETKLRQDNGGSVEPKNGPFGNKACASSVQERTAKLKSSIPELKRKAKDFNSKNV
ACWKEGERVPFLFLCLGFDMISEESSRIIITDIVCNMLRTVMDTTPDDLVSTVYLLANKI
APAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDA
LTITKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQT
LLAALGQAAVYAEKHSTPPSNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSK
TCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRN
AERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDHGKQKILPFQILSTRARKNVAMSD
IKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKF
LDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGK
RTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTI
NPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSS
EQVADMYNAQKHNHQNNQDDNEDD
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgctttcactgcgttcatgttattatctacgccccatcacattgcctcatccccaattc
aagaaactcatcttcttcaacaaacctccctctttcaaacccatttttcagaattttgtt
tcatcaatgtcttctcgtccttctgcattcgatgctctcatgtctggtgctcgggccgct
gccaagaagaagcccgttaattcttctcccaagaagcgtaaagcccttgattctttggac
cctcctccaaaacctagctcttccgttgctctggagtcaacgccggctgttgaatcgcag
tgcggcagttcaatcgcaaatttggacaatcatggaggtactcatctggtaaagtccgag
gacgctgcagatttgggggaaaccaagttgcgtcaggacaatggtggcagtgttgaaccc
aagaacgggccgtttgggaacaaggcgtgtgcgtccagtgttcaagaaagaactgcaaaa
ttgaagagctctattccagagttgaaaaggaaggccaaggatttcaactcgaagaatgtt
gcatgttggaaagagggcgaacgggttccctttttgtttctgtgtttggggttcgatatg
atttcggaggagtctagtaggattattatcaccgatatagtctgcaacatgctgaggacc
gtcatggatactacgcccgacgacttggtatctactgtgtatcttttggcgaataagatt
gctccagctcacgaagggcttgagttggggattggggatgcttctattatcaaagctctt
tctgaggcttttgggaggacagaggcacaggtcaaaaaacagtacaaggaattgggagat
ttaggtcttgttgctaaagccagccgttcatctcaatccatgatgcgaaagcccgatgct
ttaactattaccaaagtatttgatacatttcggctgattgctaaggaatctggcaaggat
agtcaggagaaaaaaaagaaccatatcaagtcactgcttgttgctgccactgactgcgaa
cctttatatctgattagattgctgcagacaaaattgcgaattggacttgctgagcagact
cttttagctgcattaggacaagcagctgtatatgctgaaaaacactcaacaccaccatcg
aatattcaatctcctctagaagaggcttctaagattgttaagcaggtgtattctatactc
ccagtttatgataaacttgtccctgctcttcttagtggtggtgtgtggaatctttcaaaa
acgtgcaactttacaccgggaattccaattggacccatgctggcaaaacctacaaaagga
gtgtctgagatcttaaataaattccaaggtttggaatttacttgtgaatacaaatatgat
ggggagcgtgcccagatacattacatggaagatggttcagttgagatctacagtcgaaat
gctgaacggaacactggaaagttccctgatgttgttctcacggtatcaaggataaagaaa
ccatctgtaagatcatttattttggattgtgaacttgttgcttatgatcatggaaaacaa
aagattctgccttttcagattctgagtactcgagctcgtaagaatgtggccatgagtgat
attaaggttgaagtgtgtgtatttgcttttgatctactgtatcttgatggtcaaccactt
atccagagagaacttaatgttcgtcgagagcttctctatgattcatttattgaagaacct
ggatattttcaatttgccacagcaataataacaaatgaccttgaggaaatacaaaagttc
cttgatgcatcggttgatcaaagctgtgagggtttaataatcaaaacactgaaccgggat
gctacttatgaaccttccaagaggtcgcataactggctaaaactgaagaaggattacata
gacagcataggggattcgcttgatctggtaccaattgctgctttccatggccgtgggaaa
cgtacaggtgtctatggtgcatttctccttgcctgttatgataatgacaacgaagaattt
caaagcatttgtaagataggaactgggttttctgaagcaatgcttgaggaacgttctgca
agtctccgttctaaagtcattcctgaacctaagtcatattatcggtatggagatacaatc
aatccagatgtttggtttgagcctactgaggtttgggaggttaaagcagcagatttaact
atcagcccagttcatcgtgcaggagttggcattgtggattctgacaagggaatttctctt
cggtttccacgtcttgttcgtgtaaggaaagacaaaaatccagaggaagcatcatcatca
gagcaggttgccgacatgtataatgctcagaaacacaaccaccaaaacaatcaagatgac
aatgaagacgactaa

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