Bordetella holmesii 44057: D558_1466
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Entry
D558_1466 CDS
T03379
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D558_1466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_1466
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D558_1466
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D558_1466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
AAA_25
nSTAND3
AAA_22
DnaJ_CXXCXGXG
AAA_21
NACHT
Viral_helicase1
cobW
MeaB
Motif
Other DBs
NCBI-ProteinID:
AIT26140
LinkDB
All DBs
Position
complement(1392942..1395800)
Genome browser
AA seq
952 aa
AA seq
DB search
MDEIRIRGARTHNLKNVSLDLPRHRLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMDKPDVDLIEGLSPAISIEQKAAGHNPRSTVGTITEIHDYLCLLYARVGTPYC
PDHGLPLQAQSVSQMVDAVLAWPADTRLAILAPIARARKGSFEDECASLQAQGLVRLRVD
GKLVEIDQMAPLKKTEKHDIDVVIDRLRARPESKQRLAESFETALQLADGRAIALDMDST
REHVFSSRYACPVCSHSLPELEPRLFSFNNPMGACPSCDGIGQVGYFDPKRVVAFPELSL
AAGAIRGWDKRNAFTHSLLTSLATHYEFDIETPFEELSDEIRDKVLYGSGDEEIAFFYLN
EKGRSSVKRHPFEGVIPNLERRWRETDSATVREELGKYRNIKTCPDCGGSRLRPEARHVL
IGDEPGQGQERGRAIYEVEAMPLSACLAWFQMLKLTGAKQEIAQRIVREIEARLSFLNNV
GLTYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLISTLQH
LRDLGNSVIVVEHDEDMIRLADWVVDMGPGAGEHGGQVVAQGRPETVEADPASLTGQYLS
GAREIAIPQRRPVTDDLPWLELTGATGNNLKSVDLRLPAGRLVCVTGVSGSGKSTLINDT
LAVAVARALNHAQGDAAPYATLTGLEHFDKTISVDQSPIGRTPRSNPATYTGLFTPIREL
FAGVPEARTRGYDPGRFSFNVKGGRCEACQGDGVVKVEMHFLPDIYVPCDVCHGKRYNRE
TLEIRYRGRNISQVLDLTVEQALEYFDSVPAIARKLQTLIDVGLSYIRLGQSATTLSGGE
AQRVKLSLELSRRSTGRTLYILDEPTTGLHFRDIEMLLEVLNQLVDSGNTVLIIEHNLDV
IKTADWLIDMGPEGGDGGGRVMAQGTPETVAEAAQSHTGHYLARVLQRNKNR
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatacgcattcgcggtgcccgcacgcacaatctcaagaatgtttcactggat
ctgccgcgccaccgtctggtggtgatcaccggcctgtccgggtcgggcaagtcgtcgttg
gccttcgatacgctttatgccgaaggccagcggcgctatgtcgaaagcctgtcggcctat
gcccggcagttcctgcagttgatggacaaaccggacgtggacctgatcgagggtctgtcc
ccagccatctccatcgagcagaaggccgcgggccacaacccgcgctccacggtcggcacc
atcaccgagatccatgactatctgtgcctgctctacgcccgggtaggcaccccctattgc
ccggatcatggcctgcccctgcaagcgcaaagtgtcagccagatggtcgacgcggtgctc
gcctggcctgccgatacccggctggccattcttgcccccatcgcccgggcccgcaaaggc
agtttcgaggacgagtgcgctagcctccaggctcagggccttgtgcgcctgcgcgttgac
ggcaaactcgtcgaaatcgaccagatggcgccgctgaagaaaaccgagaagcacgatatc
gatgtcgtgatcgatcggctgcgagcccggccagaaagcaagcagaggcttgccgaaagc
ttcgagaccgccttgcagctggccgatgggcgcgccattgcgctggacatggacagcacg
cgtgagcacgtattctccagccgctacgcctgccctgtctgtagccacagcctgccggaa
ctcgagccgcggttattcagtttcaacaatcccatgggtgcctgccccagttgcgacggc
atcgggcaggtggggtatttcgaccccaagcgcgtggtggccttcccggaactcagcctg
gcggccggagccatccgcggttgggacaaacgcaatgccttcacgcactcgctgctgacc
agcttggccacgcattacgagttcgatatcgaaacacctttcgaagagctcagcgacgag
atacgcgacaaagtgctctatggctcgggcgacgaagaaatcgccttcttctaccttaat
gaaaaaggccgcagcagcgtcaagcggcatcccttcgaaggggtgatccccaacctcgaa
cggcgctggcgcgagaccgattcggccaccgtgcgcgaagagctgggcaagtaccgcaac
atcaagacctgcccggattgcggcggatcgcgattgcggcccgaggctcgccacgtgctg
atcggcgacgaacccggccagggccaggagcgcggccgggccatctacgaagtggaggcc
atgccgctgtcggcctgcctggcctggtttcaaatgctcaaactgaccggtgccaaacag
gagatcgcgcaacgtatcgtgcgcgagatcgaagcgcggctgagctttctgaacaacgtc
ggcctgacctacctgtcgctggaccgcagcgccgacacgatttcgggcggcgaggcacaa
cgcatccgcctggccagccaaatcggttccggcctgactggcgtcatgtacgtgctggac
gaaccctccatcggcctgcatcaacgcgataacgatcgcctgatctccaccctgcagcac
ctgcgcgacctgggcaacagcgtcatcgtggtcgagcacgatgaagacatgatccgcctg
gccgattgggtggtggacatggggccgggtgccggcgagcacggcggccaggtcgtcgcg
cagggacgccccgaaaccgtcgaggccgatccagcctcgctgacaggccagtacctcagc
ggtgcgcgcgaaattgccatcccgcaaagacggcccgtcaccgacgatctgccctggctg
gaactgactggcgccacgggcaacaacctcaagtcggtcgacctgcgcctgcctgccggc
cgcctggtctgcgtgaccggcgtctccggctcgggcaagtcgaccctgatcaatgacacg
ctggccgtggcggtggcgcgcgcgcttaatcacgcgcaaggcgatgccgcgccctacgcg
acgctgaccggcctggagcatttcgataaaaccatcagcgtcgatcaaagtccgatcggc
cgcacgccacgcagcaacccggccacctataccgggctgttcacaccgattcgcgagttg
ttcgccggcgtgccggaagcacgcacgcgcggctacgaccccggccgcttcagcttcaac
gtcaagggcggacgctgcgaagcctgccagggcgatggcgtggtcaaggtggaaatgcat
tttctgcccgatatatacgtgccttgcgacgtctgccacggcaagcgttacaaccgcgaa
acactggagatccgctaccgcggtcgcaatatcagccaagtgctggacctgaccgtcgag
caggcgctggagtatttcgattccgtccccgcgatcgcgcgcaagctgcagaccttgatt
gatgtcggcctgtcgtacatccggctagggcaatcggcaaccacgctgtcgggtggcgaa
gcgcaacgggtcaaactgtcgctggaactgtcgcggcgcagtacgggccgcacgctctac
atcctggatgaacccaccaccggcctgcatttccgcgatatcgaaatgctgctcgaagtc
ctcaatcaactggtcgacagcggcaacacggtgctgatcatcgagcacaacctcgatgtc
atcaaaactgccgactggcttatcgacatgggtccggaaggcggcgacggtggcggcagg
gtgatggcgcagggcacgcccgaaacggttgccgaggctgcgcaaagccataccggccac
tatctggcccgggttttgcagcgcaacaaaaaccgctag
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