Bordetella holmesii 44057: D558_2216
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Entry
D558_2216 CDS
T03379
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D558_2216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_2216
Enzymes [BR:
bhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D558_2216
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D558_2216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
ELP6
DUF3638
HemY_N
Motif
Other DBs
NCBI-ProteinID:
AIT26877
LinkDB
All DBs
Position
complement(2085949..2088915)
Genome browser
AA seq
988 aa
AA seq
DB search
MTQVTAPGEFCLRGGLVDLFPMGSAVPYRLDLFDDEIESIRAFDVDTQRSLYPVAEVQLL
PGREFPMDEAARNHFRARFREVFEGDPSRALPYKDIGNGIAFAGVEYYLPLFFEQTATLF
DYLKTGTLTVPLGNIDDAIQRFSQDTASRYNFLKSDRERPVLPPSALFLDGEALYGGFKD
FARLALTGEPPHPDFCNAPDVAVARRAEDPVAKLRALVARPGARVLLCADSAGRRETLSQ
MLAEQGLAATEQTDEIAGFLQTPANFGLTIAPLTAGFGLTEGGLVFLTENDLYPGNAGVK
RRGKRTQEGSSNVEAMVRDLAELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYA
SGATLYVPVSQLHVIARYSGADPDAAPLHQLGSGQWDKARKKAARQVRDTAAELLALYAQ
RAAREGYAFNLPLSDYEAFAEGFGFEETPDQSAAIQAVILDMTSGKPMDRLVCGDVGFGK
TEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFAEWPVRVVELSRFRSAKEVSA
AIEGINDGRVDIVIGTHKILSKDVHFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTL
TATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYF
LHNEVETIHNRRARLEELVPEARIGVAHGQMPERELEQVMKDFYQQRFNVLLCTTIIETG
IDVPSANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQ
AMEELGSGFYLAMHDLEIRGTGEILGDSQSGNIQEVGFSMYNEMLSEAVRALKSGEEPDL
DAPFKLACEVNLHAPALLPSDYCPDVHGRLAIYKRLSHAHDEDDLIRIQEELIDRFGKLP
EPAQTLLTTHRLRLAAEPLGIVKIDVSETQALLQFGPKAVVDPLRIIELVQKQRHIKLSG
QDKLRIEITTAQVTARADAVRAVLRSLK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaggtcaccgcgcctggcgagttctgcctgcggggcggattggtcgacctgttc
cccatggggtcggcggtgccctaccggctggaccttttcgatgacgagatcgaatccatc
cgcgcctttgacgttgatacccagcgcagcctttaccccgtggccgaagttcagcttctg
ccgggacgcgaatttcccatggacgaggcggcacgcaaccattttcgtgcgcgtttccgt
gaggttttcgagggcgatccgtcccgcgccctgccctacaaggacatcggcaatgggatc
gctttcgccggagtcgaatattatctgccgttgtttttcgaacagacggctacgctgttt
gactacctcaagaccggtacgctcaccgtccctctgggcaatatcgacgacgccatccag
aggttctcccaggacactgccagccgctataacttcctcaaaagcgaccgcgaacggccc
gtgctgccgccatcggcgctgtttctggatggagaagcgttatatggcggtttcaaggac
ttcgcccgcctggcactgaccggcgagccgccgcacccggacttttgcaacgcgccggac
gtggctgtcgcccgccgcgccgaagacccggtagccaagttgcgtgcgctcgtggcgcgc
cccggcgcccgcgtactgctatgcgcggactccgcaggccgacgcgaaacgctatcccaa
atgctggccgagcaaggtctcgcggcgacagagcagaccgacgagatcgccggttttcta
caaacaccggccaacttcgggctgaccatcgcgcccctgacggcgggttttgggctcacc
gaaggcggtttggtttttctcaccgagaacgacctctaccccggcaatgcgggcgtcaag
cgacgcggcaaacgcacccaggaaggcagcagcaacgtcgaagccatggtgcgcgacctg
gccgaactgcgtgagggcgatcctgtcgttcatgcccagcacggcatcggccgctaccac
gggttggtcaatatggacatgggtgaaggagagatggagttcctgcacctggagtacgcc
agcggcgccacgctctatgtgccggtatcacagttgcacgtcattgcgcgctatagcggc
gcagatcccgacgccgcgccactgcatcaactcggctccgggcagtgggacaaggccaga
aagaaagccgcaaggcaagtccgcgacaccgccgccgaattgctcgcgctgtatgcgcaa
cgcgccgcgcgcgaaggctacgctttcaatctgccactgtcggactatgaagcttttgcc
gaaggcttcggcttcgaagagacgcccgatcagtctgccgccatccaggccgtcatcctg
gacatgacctccggcaagcccatggaccgcctggtctgcggcgatgtgggctttggcaag
accgaggtcgcgctgcgcgccgcctttctggccgtggccaacggcaagcaggtcgccctg
ctgtgcccgaccactctcctggccgagcaacatgcacagacattttcggaccgctttgcc
gagtggcccgtgcgcgtggtggagctgtcgcgctttcggtcagccaaggaagtcagtgcc
gccatcgaaggtatcaatgacgggcgtgtggatatcgtcattggcactcacaaaatcctg
tccaaggatgtccacttcaaacgcctgggcctggtcatcatcgatgaggagcatcgattc
ggcgtacgccagaaagagacactcaaagctttgcgagccgaagtggacgttctgacgctc
acggccacgcctatcccccgcacgctgggcatgtcgctcgaaggcatacgcgacttctcc
gtgatagccaccgcgccgcaaaagcgcctggccatcaagaccttcgtgcggcgcgaagac
ggcagcaccatacgggaagcgttgctacgcgaactcaagcgtggcggacaagcctacttt
ctgcacaacgaggtcgagaccatccacaatcgccgggcgcgactggaggaactcgtaccc
gaggcacgcataggcgtagcacatggccaaatgcccgagcgcgagctcgagcaggtcatg
aaggacttttatcaacagcgcttcaatgtgctgctatgcacgaccatcatcgaaacgggc
attgacgtgcccagcgccaataccatcgttatccaccgagccgatcgttttggcctggct
caattgcaccagttgcgcggccgggtcggccgctcgcatcatcaggcctacgcctatctg
cttacgccgggcgaagatgccatcacgagcaatgccaaaaagcgtcttgaggccatccag
gcaatggaagagctgggttccggtttctaccttgccatgcacgatctggaaatccgcggt
actggcgagattctgggcgactcccagtccggcaacattcaggaagtcggtttctcgatg
tacaacgaaatgctcagcgaggcagtgcgtgcattgaaatcaggcgaagaacccgacctg
gatgctccgttcaaactggcatgcgaagtcaacctccatgcgcccgccctgctgccatcc
gattactgccccgacgtgcatggcaggctggccatctacaaacggctgtcgcatgcgcac
gatgaggacgacctcatccgcattcaggaagagttgatcgaccggttcggtaagctgccc
gagcctgctcagacgctgttgaccacgcatcggctgcgcctggccgccgaaccattaggc
atcgtcaagatcgacgtcagcgaaacccaggcgctactgcagtttggcccaaaggccgtc
gtcgatcccttgcgcatcatcgaactggtgcaaaagcagcgccacatcaaactctccgga
caggacaagctgcgcattgaaatcaccacagcgcaggtcaccgcacgcgccgacgccgtg
cgtgccgtgctgcgctctctaaaatag
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