Bordetella holmesii 44057: D558_3654
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Entry
D558_3654 CDS
T03379
Name
(GenBank) type VII secretion system (T7SS), usher family protein
KO
K07347
outer membrane usher protein
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm02020
Two-component system
bhm05133
Pertussis
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D558_3654
09160 Human Diseases
09171 Infectious disease: bacterial
05133 Pertussis
D558_3654
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
bhm02000
]
D558_3654
02044 Secretion system [BR:
bhm02044
]
D558_3654
02035 Bacterial motility proteins [BR:
bhm02035
]
D558_3654
Transporters [BR:
bhm02000
]
Other transporters
Pores ion channels [TC:
1
]
D558_3654
Secretion system [BR:
bhm02044
]
Chaperone-usher system
Type 1 pilus assembly protein
D558_3654
Bacterial motility proteins [BR:
bhm02035
]
Pilus system
Fimbrial proteins
D558_3654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
Motif
Other DBs
NCBI-ProteinID:
AIT28294
LinkDB
All DBs
Position
complement(3420901..3422856)
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AA seq
651 aa
AA seq
DB search
MSPTLLSAGLLALFSSAAPAAQQQAELQFDPRMLWGSASHADLRRFARRNVLPPGLHQVE
VVINGERGVPMRVRFKAAASASLHDSDALACLDHDQLYRLGVNLDALDPALRAQLAAGAC
VGVRDIYPDSVESFDYATAQLSFSVPQAYVRNRYQRDIPPERWQEGITAFRSNYSYSYSR
YDSRGASFQSFSGLFDSGLNVGGWYFRNSAFFSLAGGRRELRSQRSTLQTDIPSWRARLV
LGDIYAGSEYFSPYQVRGFTLASDPAMLPYSERLYRPTVRGVAATQASIKILQGGNVIYQ
ASLAPGPFAIDDYSPIGYGGDLTVIVTEANGAVQRFVVPFGNAVRLIRKGQLQYALTAGR
YARGLQAAAAPWVAQASGRWGLQDGVNLYGGLLGAHKTYAAMTLGAAFNTPVGALSLDTT
WAYARPVRQNSFYGTSYRLSYSKTLESSRTVVRLATLRYSSEGFWTLSDSLARQFTPLRP
GRPRGEFSLAVSQPLGAYGSLYMSSALRNYWRSTARQTQWELGYGTRVKGVGVYLSASFS
NGSFGPDRQVMLNFSIPLSSDASSGSLRTSVLRTRNRGSNERVSYEGTVGQSRALSYGLD
VTRNADRSTTYGLSANYLGRYGQIAGAFTQQPSGSQVFVNGSGGWWPIVGG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
ttgtctccgaccttgctgagcgccggattattggcgctgttttcctcggcagcacccgct
gcgcagcaacaggccgagctgcagtttgatccccgcatgctgtggggctcggcgagccac
gcggacttgcgcaggtttgcgcggcgcaacgtcttgccgcccggtctgcaccaggtcgag
gtggtcatcaatggcgagcgcggcgtgccgatgcgggtgcgcttcaaggcggccgcctcc
gcttcgcttcacgacagtgatgcattggcgtgcctggatcacgaccagttgtataggctg
ggcgtgaacctggacgcgctggatccggcactgcgcgcgcaactggctgccggtgcctgc
gtgggcgttcgagacatctatcccgacagcgtcgagagcttcgactacgccacggcgcag
ttgagtttcagcgtgcctcaggcctacgtgcgcaatcgttaccagcgcgacattccgccg
gaaagatggcaggagggcattacggcgtttcgcagtaactacagctatagctacagccgc
tatgactcccgcggcgcgtcgtttcagtccttcagcgggttgttcgacagcggtttgaat
gtgggcggctggtattttcgcaatagcgcgtttttcagccttgcgggcggccgccgcgag
ttgcgttcgcagcgcagcaccttgcaaaccgacatcccttcctggcgcgcccgcctggtg
ctgggagatatctacgctggctccgagtatttcagcccgtatcaggtgcgcggcttcacg
ctggcaagcgacccggccatgctgccttactcggaacggctctatcgacccaccgtgcgt
ggagtcgcggccacccaggccagcatcaagatactgcagggtggcaacgtcatctaccag
gccagtctggcaccggggccttttgccatcgacgactattcgcccatcggctatggcgga
gacctgaccgtcatcgttaccgaagccaacggggccgtgcagcgctttgtcgtgccgttt
ggcaatgcggtgcgactgatccgcaaggggcaactgcaatacgccctgacggcggggcgc
tacgctcgtggcttgcaggccgccgcggcaccttgggtggcgcaggccagcggacgctgg
ggtcttcaggatggcgtcaatctctatggcgggctgttgggcgctcacaaaacctatgcc
gccatgaccctgggcgcggcattcaacaccccggtgggagcgctgagtctggatacaaca
tgggcctacgcccggccggtgcggcaaaacagtttctacgggacgagctatcgcctctcg
tatagcaaaacgctggaatcgagccgtacggtggtgcgcctggcgaccttgcgatactcg
tcagaggggttttggacgttatccgatagcctggcgcggcaattcacccccctgcgtcca
ggcaggccgcgaggagaattcagtctggcggtcagccagcctctgggcgcctacggcagc
ttgtatatgtccagcgcgctgcgcaattactggcgctcgaccgcgcggcagacccagtgg
gaattgggttacggcacgcgagtcaaaggggtaggcgtttacctgtcggcctcgttcagc
aatggcagcttcgggcccgaccgtcaggtcatgctgaacttttccatcccgctgtcgagc
gatgcctcgtcaggctcgctgcgcacgagcgtgttgcgcacccgtaaccggggcagcaat
gagcgcgtctcctatgagggcaccgtcggccagagcagggcgctgagttacggactggat
gtcacccgcaacgccgaccgcagcacgacgtatggcctgagtgccaactacctggggcgt
tacgggcagatcgcgggtgccttcacgcaacagccgtctggcagccaggtgtttgtcaac
ggcagcgggggctggtggcccatcgtgggggggtga
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