Bartonella henselae BM1374163: PRJBM_00861
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Entry
PRJBM_00861 CDS
T03068
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhn
Bartonella henselae BM1374163
Pathway
bhn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PRJBM_00861 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhn03400
]
PRJBM_00861 (mfd)
Enzymes [BR:
bhn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRJBM_00861 (mfd)
DNA repair and recombination proteins [BR:
bhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PRJBM_00861 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
AAA_16
AAA_22
UB2H
zf-CCHC_4
Motif
Other DBs
NCBI-ProteinID:
CDO40241
LinkDB
All DBs
Position
complement(980823..984329)
Genome browser
AA seq
1168 aa
AA seq
DB search
MPIFKKIIIPQNISAHMVFDGITDGFEAFALAQLSLKIAQNKPLVYVVRDGTKLTHLQQV
LNFIEPNLPVFQFPAWDCLPYDRVSPGIAVMARRLSTLAHIANLRHNPRAAIILTTANAI
MQKLPPHEMIETQVIYARIGQRTSMGHLIQFLEANGFERVTVVRDVGEFAVRGGILDIFS
SVDAEPLRLDFFGDTLETIRVFDSETQRTTHKRTEFFLHSMSEVILTPELINRFKSNYIR
TFGVSQKKNMLYEALSQGRRFAGMEHWLPFFYEKLDTFFDHCGNLPFVFEHLIEEVLTER
YRLIEDYYDARKEKEHENDKENPTSYHPIEPSLLYLTPERVLEIAQQSGQRIDFTPFNVP
QTFGKTVVHANIKAGYDFVKERNAQEKNVFSSVVHHIASLRAAKKKVLLAGWSEGSLARL
LQVLDEHGLKKIDIVKSLQTVRATPRDHITAAVIRIEHGFEVEDFAIITEQDILGDRFIR
SPKRRKHNKNFISEIAALNSGDIVVHIDHGIGQFVGLKTITTAGILRDCLEIKYAGGDLL
FLPVENIELLSRYGSEGTDVTLDKLGGVAWQARKTRLKKHLLEMANQLIRIAAERATRSA
PALLPPIGPFDEFVACFPYEETEDQMDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIR
SAFVAALNGYQVAVVVPTTLLSRQHYKTFVSRFQGLPVKIGHASRLVKTKELAQVKKGLS
DGTIDIVIGTHALLSDAVNFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIP
RTLGLALSGVRELSLITTPPIDRMAVRTFIAPFDSLVIRETLLREYYRGGQSFYVCPRVS
DLGFVEEYLKAYVPELKFVVAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTA
NTLIVHRAEMFGLAALYQLRGRVGRSKQRAYALFTFPSGKVLTPAADRRLKVLQSLDSLG
AGFQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEDAVVELKDGKQSEDKQWSPQ
ISLGITVMIPESFVPDLSLRMGLYRRLTELDDLEQIDEFAAELIDRFGSLPLEVQHLLKV
FYIKILCRKAHVEKLDTGPKGVVIQFRNNYFANSISLVQWVGKQGSMAKIRPDQTIAFIR
DWATVDERLIGVATIMTQLVEMAEQHSV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcctatatttaaaaaaattattatccctcagaatatttctgctcacatggtttttgat
ggaattactgatggatttgaagcctttgctcttgctcaattgagtttaaaaattgcacaa
aacaaaccacttgtttatgttgttcgtgatggaacaaaacttacgcacttacagcaggtt
ctaaattttattgagccaaatttgcctgtttttcaatttcctgcatgggattgtttaccc
tatgatcgtgtatctcctggaattgctgttatggcacgtcgtctttcaactttggcacat
atagccaatttacgtcacaatccacgtgctgcaattatattaacaacagcaaatgcgatt
atgcaaaaattgcctcctcatgaaatgattgagacacaggtgatttatgcccgtattggt
cagcgtacgagcatggggcatttaattcaatttttagaagccaatggttttgagcgtgtt
acggttgtccgtgatgttggtgaatttgctgtgagaggaggaattcttgatatcttttct
tccgttgatgctgaacctttacgacttgatttttttggagataccctggaaactattcgt
gtatttgattcagaaacacaaagaactacacataaaagaactgaatttttcttacactca
atgagtgaagttattcttacacctgaacttattaacagatttaaaagcaattatatccgt
acattcggtgtgtcacaaaaaaagaacatgctgtatgaagctctttctcaagggcgacgc
tttgctggtatggaacattggctcccatttttttatgaaaaacttgacactttttttgac
cattgtggcaatttaccatttgtttttgagcatctcatagaagaagtgctcaccgagcgt
tatcgccttattgaagattattatgatgcacgcaaagagaaagagcatgaaaatgataaa
gaaaatcctacttcttatcatccaatagagcctagccttctctatttaacaccagagcgt
gttttagaaattgcgcaacaatccggacaacgtattgattttacgccttttaatgttcca
caaacttttggaaaaactgttgttcatgcgaatattaaagctggatatgattttgtaaaa
gagcgtaatgcgcaagagaaaaatgttttttcaagtgtcgttcatcatattgcttcattg
cgtgctgctaaaaagaaggtgctattagccggttggagtgaagggtctctggcacgtttg
ctacaggttcttgatgagcatggattgaaaaaaatagatattgtaaaatcattacaaacg
gtgagagcaacaccacgtgatcatataacagcagctgttataaggatagagcacggtttt
gaagtggaagattttgctatcataacagagcaagatatcctcggtgatcgtttcataaga
tcacccaaacggcgtaaacacaataaaaattttatttctgaaattgcagctttaaattct
ggcgatatcgttgtgcatatcgatcatggtattggacaatttgttggtcttaaaactatc
actacagctggaattttacgagattgtcttgagattaagtatgctggaggcgatctgctc
tttttacctgttgaaaatattgaacttctttcacgttatggatcggaaggaacagatgta
acgttagataagttaggtggtgttgcttggcaagcaagaaaaacacgacttaaaaaacat
ttattggaaatggctaaccaattaatccgtatagctgcagagcgtgctacgcgttctgca
cctgctttgcttccaccaattggaccatttgatgaatttgttgcatgctttccttatgaa
gaaacggaagatcaaatggatgcaattgatgcggttttagacgatttagcatcgggaaaa
ccaatggatcgcttaatatgtggtgatgttggctttggaaaaacagaagttgccattcga
agcgcttttgttgcagcattaaatggatatcaggttgctgttgttgtgccaacaactttg
ctttcacgacaacattacaaaacttttgtttcacgttttcaaggattacccgttaaaatt
ggtcatgcttcaaggcttgtcaaaactaaagaacttgctcaagtcaaaaaaggactttca
gatggtacaattgatattgtcattggaacacatgcacttttaagcgatgcagtgaatttt
ttacgcttagggcttcttatcattgatgaggaacaacattttggcgtaaaacacaaagag
cggttaaaagagcttaaaagtgatattcatgttcttacactttcagcaacaccgataccg
cgcactttaggacttgcgttatcaggggttcgtgaactttcattgataacaactcctccc
attgatagaatggcggtacgtacttttattgcaccgtttgattcacttgttatacgcgaa
acattgcttcgagaatattaccgtggtggacaaagtttttatgtatgccctcgtgtttct
gatcttggctttgtagaagaatatctcaaagcatatgttcctgaacttaaattcgttgta
gctcatgggcaaatgccagctggacaacttgatgatattatgaatgcattttatgatggg
caatatgatgttctgttgtcaacaaccatcattgaatcaggtcttgatattccaacagct
aataccttaatcgtgcatcgtgctgaaatgtttggccttgctgctctctatcaactgcgt
ggtagggtagggcgttcaaaacaacgtgcttacgcactctttacatttccttctggtaaa
gttttaactcctgctgctgatcgtcgtcttaaagttttacaatctcttgatagcttgggg
gctggttttcaattggcaagccacgatatggatattcgcggttcgggaaattttttaggt
gaagagcaatcggggcatatcaaagaagttggatttgagctctatcaaaaaatgcttgaa
gatgccgttgttgaattaaaagatggtaagcagagtgaggataaacaatggtctcctcaa
atttcacttggtataacagtgatgataccagaaagtttcgtgcctgacttatccttacgt
atggggctttatcgtcgtttgacagaacttgatgatttagagcaaattgatgaatttgca
gcggaattaattgatcgttttggatctttgccgcttgaagttcaacatcttcttaaagtc
ttttatatcaaaatattatgccgaaaagcacatgtggaaaaattggatactggacctaaa
ggggttgttatacagtttcgtaataattatttcgcaaatagcatttctcttgttcagtgg
gttgggaaacaaggttcgatggctaaaattcgaccagatcaaacaattgcttttattcgt
gattgggcgacagtggatgaaaggcttattggagtagcaactattatgacacagcttgta
gaaatggcagaacagcactctgtttag
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