Bartonella henselae BM1374165: BM1374165_01154
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Entry
BM1374165_01154 CDS
T03309
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhs
Bartonella henselae BM1374165
Pathway
bhs03030
DNA replication
bhs03410
Base excision repair
bhs03420
Nucleotide excision repair
bhs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BM1374165_01154 (ligA)
03410 Base excision repair
BM1374165_01154 (ligA)
03420 Nucleotide excision repair
BM1374165_01154 (ligA)
03430 Mismatch repair
BM1374165_01154 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhs03032
]
BM1374165_01154 (ligA)
03400 DNA repair and recombination proteins [BR:
bhs03400
]
BM1374165_01154 (ligA)
Enzymes [BR:
bhs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BM1374165_01154 (ligA)
DNA replication proteins [BR:
bhs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BM1374165_01154 (ligA)
DNA repair and recombination proteins [BR:
bhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BM1374165_01154 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BM1374165_01154 (ligA)
MMR (mismatch excision repair)
DNA ligase
BM1374165_01154 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BM1374165_01154 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
CDO47151
UniProt:
X5M593
LinkDB
All DBs
Position
complement(1297236..1299386)
Genome browser
AA seq
716 aa
AA seq
DB search
MRKDEIQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNTEIEALFP
ELIRPDSPSHKIGAPISEKFEKSVHSQPMLSLDNAFSSEDVSEFMERVRRFLRLPETQML
EITAEPKIDGLSLSLRYEQGRLVCAATRGDGYVGENVTANARTISDIPQVLQGKFPDIIE
VRGEVYMRRADFQALNVNQQEKGKLAFANPRNAAAGSLRQLDSRITASRKLQFFAYACGE
VSEIFAESQMGMMEKLKEYGFVINPLIKKIKSLEELISYYHDIEERRHALSYDIDGIVYK
VNDLMLQMRLGFVSRSPRWAIAHKFPAEKAMTVLEGIDIQVGRTGALTPVARLAPITVGG
VVITNASLHNEDYIKGIGPKGEPIREGNDIRVGDTVIVQRAGDVIPQIIDIVAEKRSKDA
SAFVFPYLCPACGSYAVREIGEAVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLGKKQV
EFFFQIQDETLCIHTPADIFTLQRRQEKSLVRLENMEGFGTVSVRKLYDAINARRKIPLS
RFLFALGIRHVGEVNARRLARAYQNYTAFETAAMAATMPDDKVGKEGNEAWMELTNIEGI
GPQVGEAIIDFYKEVHNREVLSGLLCEVTPLDEESVMTASSPIAGKIIVFTGTLTRMSRD
EAKALAERLGAKTSGSLSKKTNLLVAGVGGGSKLTKAQELGVEVIDEEAWLQLIEG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaagacgaaattcaaaacctgactgctcttgaagcagcaagtgaattagagtgg
ttggcaaaagagattactcgtcatgatgtgctttataatcgtaatgaccaacctgaaatc
tctgatgcagaatatgatgctcttcgccggcgtaatacggaaattgaagctctctttcct
gaacttattcgtccagattctccctcacataaaattggagcaccgatttctgaaaagttt
gaaaaatctgttcattcccagccgatgctttcacttgataatgcctttagctctgaagat
gttagtgaatttatggagcgtgttcggcgttttttacgactgccagaaacacaaatgttg
gaaataacagcagagccgaagattgatggtttatctttatctttgcgctatgaacaagga
aggcttgtctgtgctgcaacgcgtggtgatggatatgtcggtgaaaatgtaactgcgaat
gcacgaacaatttctgatattccgcaagttttacaaggcaaattccctgatataattgaa
gttcgcggtgaagtttatatgcggcgggcggatttccaagcacttaatgtgaatcaacaa
gaaaagggcaaattagcttttgctaatcctagaaatgcagcagctggttctttacgtcaa
ctggattcaagaataactgctagcagaaagctgcaattttttgcttatgcttgtggtgaa
gtgagtgaaatatttgcagaaagccaaatggggatgatggaaaagctaaaagaatatggc
tttgttatcaatccattaattaaaaaaattaaatcattagaagagcttatttcctattat
catgatatcgaagaacgtcgtcatgccttaagctatgatattgatgggattgtttataag
gttaatgatttgatgctgcaaatgcgtttgggttttgtttctcgttcgccacgttgggca
atagcgcataaatttccagcagaaaaagctatgacagttttggaaggtattgatattcaa
gtcggtcgtacaggagcattaactcctgttgcccggcttgcacctattactgttggtggt
gtggtgattaccaatgcaagtttgcataatgaggattatatcaagggaattggtcctaaa
ggggagccaattcgtgagggaaatgatattcgtgtaggcgatacagtgattgtacagcgt
gctggtgatgtaatccctcaaattattgatattgttgctgaaaagcgttcaaaggatgct
tctgcttttgtttttccttatctgtgtccagcttgtggaagttatgctgttcgtgaaata
ggagaagctgtgcgtcgatgcacgggtgggcttatttgtcccgcacaagcgattgagcgt
attcgtcattttgtttcgcgcaatgcctttgatattgaggggcttggtaaaaaacaggtg
gaatttttttttcagattcaagatgaaacgctttgtattcatacgccagctgatattttt
acgttacaacgtcgccaagaaaaatctctggtccgtttggaaaatatggaggggtttggt
actgtttcagtgcgtaaactttatgatgctattaatgcgcgccgaaaaattcctttaagt
cgttttttatttgcactaggaattcgccatgttggagaggttaatgcccgccgtcttgca
cgtgcttatcaaaattatacagcttttgaaactgcggcaatggcagctactatgcctgac
gataaggtgggtaaagaaggcaatgaggcttggatggagcttaccaatattgaagggatt
ggaccacaggtaggtgaagcaattattgatttttataaggaagtgcataaccgcgaggtt
ttgtctggtttgctttgcgaagttacacctctggatgaggagtctgtcatgactgcttct
tcgccaatagcaggaaagatcatcgtttttacaggaactttgacgcgtatgtcacgtgat
gaagcaaaagcacttgctgaacggttaggtgctaaaacgtctggttctctttctaaaaaa
acgaatcttcttgttgcaggagttgggggtggatcgaaattgaccaaagcacaagagtta
ggtgttgaagttatcgatgaagaggcctggctgcagttgatcgagggataa
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