KEGG   Brevibacillus humidisoli: LOK74_06055
Entry
LOK74_06055       CDS       T08900                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bhui  Brevibacillus humidisoli
Pathway
bhui03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bhui00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LOK74_06055 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bhui03400]
    LOK74_06055 (ligD)
Enzymes [BR:bhui01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LOK74_06055 (ligD)
DNA repair and recombination proteins [BR:bhui03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LOK74_06055 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: UFJ42059
LinkDB
Position
complement(1217801..1218703)
AA seq 300 aa
MATKTQSHVIEIEGKEIPISNPDKLLWPEAGVTKLAYLRYLIEVAPHLLRYTRNRLLTVI
RYPHGIDDKHFFQKNLPDYAPDWIATAVWEKTRYPVLNDLPTLVWMANQAALEWHVSFHE
IDDEIPTELVFDLDPSTPDFDDAIDAALKLKEVLDELNLPSWIKTSGASGLQVYVPIERK
YRFEQTRQVGEFIATYLVKKNPRTLTIERLVKNRGTKLYIDYLQHWRGKTLAAAYSTRAR
PQATVSAPLRWEEVPTIHPTQFTVHTMPKRLQETGDLFTPLLSPARRVSLEPILSFLTTR
NT seq 903 nt   +upstreamnt  +downstreamnt
gtggcgaccaaaacccagtcacacgtaatcgagatcgaaggcaaagagattcccatcagc
aatccggacaaactactgtggccggaagccggtgtcaccaaacttgcctacctgcggtac
ctgattgaggtggctccccacctgctgcgctacacccggaatcgcctgctgaccgtgatc
cgctatccgcacgggattgacgacaagcacttttttcaaaagaatttgcccgattacgcc
ccggactggattgccaccgccgtctgggaaaagacccgctatccggtgctgaatgatctg
cccacactcgtctggatggcgaatcaagcagcattggagtggcatgtctcgtttcacgag
atcgacgatgaaatcccgaccgaattggtgtttgatctggacccgtctacgcctgacttt
gacgacgcgattgatgctgcactgaaactaaaagaggtactggacgaattaaacctgccg
tcctggatcaaaacatctggcgccagcggtctgcaagtgtatgtaccaatcgagcgaaag
tatcgtttcgagcagacgcgacaggtgggcgagtttatcgctacttatctggtcaaaaaa
aatcctcgcacactaacgatcgaacgcttggtcaaaaaccgcgggaccaaactgtacatt
gactatctgcaacactggcggggaaaaacgctggctgccgcgtactcaacgcgcgccagg
ccgcaagccactgtctccgctccactccgttgggaggaagtaccgacgattcatcctaca
cagtttaccgtgcatacgatgccgaagcggttgcaagaaaccggagatttgtttaccccc
ctgctttctcccgctcggagggtctcactggaaccaatcctctcctttctcaccacccgc
taa

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