Brevibacillus humidisoli: LOK74_06055
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Entry
LOK74_06055 CDS
T08900
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bhui
Brevibacillus humidisoli
Pathway
bhui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LOK74_06055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhui03400
]
LOK74_06055 (ligD)
Enzymes [BR:
bhui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LOK74_06055 (ligD)
DNA repair and recombination proteins [BR:
bhui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LOK74_06055 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UFJ42059
LinkDB
All DBs
Position
complement(1217801..1218703)
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AA seq
300 aa
AA seq
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MATKTQSHVIEIEGKEIPISNPDKLLWPEAGVTKLAYLRYLIEVAPHLLRYTRNRLLTVI
RYPHGIDDKHFFQKNLPDYAPDWIATAVWEKTRYPVLNDLPTLVWMANQAALEWHVSFHE
IDDEIPTELVFDLDPSTPDFDDAIDAALKLKEVLDELNLPSWIKTSGASGLQVYVPIERK
YRFEQTRQVGEFIATYLVKKNPRTLTIERLVKNRGTKLYIDYLQHWRGKTLAAAYSTRAR
PQATVSAPLRWEEVPTIHPTQFTVHTMPKRLQETGDLFTPLLSPARRVSLEPILSFLTTR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaccaaaacccagtcacacgtaatcgagatcgaaggcaaagagattcccatcagc
aatccggacaaactactgtggccggaagccggtgtcaccaaacttgcctacctgcggtac
ctgattgaggtggctccccacctgctgcgctacacccggaatcgcctgctgaccgtgatc
cgctatccgcacgggattgacgacaagcacttttttcaaaagaatttgcccgattacgcc
ccggactggattgccaccgccgtctgggaaaagacccgctatccggtgctgaatgatctg
cccacactcgtctggatggcgaatcaagcagcattggagtggcatgtctcgtttcacgag
atcgacgatgaaatcccgaccgaattggtgtttgatctggacccgtctacgcctgacttt
gacgacgcgattgatgctgcactgaaactaaaagaggtactggacgaattaaacctgccg
tcctggatcaaaacatctggcgccagcggtctgcaagtgtatgtaccaatcgagcgaaag
tatcgtttcgagcagacgcgacaggtgggcgagtttatcgctacttatctggtcaaaaaa
aatcctcgcacactaacgatcgaacgcttggtcaaaaaccgcgggaccaaactgtacatt
gactatctgcaacactggcggggaaaaacgctggctgccgcgtactcaacgcgcgccagg
ccgcaagccactgtctccgctccactccgttgggaggaagtaccgacgattcatcctaca
cagtttaccgtgcatacgatgccgaagcggttgcaagaaaccggagatttgtttaccccc
ctgctttctcccgctcggagggtctcactggaaccaatcctctcctttctcaccacccgc
taa
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