Blautia hydrogenotrophica: BLHYD_31090
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Entry
BLHYD_31090 CDS
T09635
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhv
Blautia hydrogenotrophica
Pathway
bhv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLHYD_31090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhv03400
]
BLHYD_31090 (mfd)
Enzymes [BR:
bhv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLHYD_31090 (mfd)
DNA repair and recombination proteins [BR:
bhv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLHYD_31090 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Phenyl_P_gamma
nSTAND3
IstB_IS21
MFD_D3
LcrG
Motif
Other DBs
NCBI-ProteinID:
WPX85069
LinkDB
All DBs
Position
complement(3212696..3216037)
Genome browser
AA seq
1113 aa
AA seq
DB search
MEAFVQPLRGLAEYEEIRSRIGRNPGLVQIAGCVESQKAHLICGLSGLFPCRLILAQDEQ
RAKELYEDYRFYDKKVFYYPAKDLLFFQADIHGNLLIKQRMQVVRALLEEESVTVVTSVD
GCMDYLMPLGQIKENLVCLNSESTIDLEELSKKLVWLGYERVPQVERSGQFAVRGGILDI
YSLTEENPWRIEMWGDEVDSIRSFDAYSQRSIENLETITIYPAAERLGEKGMVSFADYFP
VEKTLLILDEPNRMLEKGQEVEDEFRQSQKNRLEKGNRPLADNLLFEISKLCGKLNRYHG
AALCMMEPAKKFWKVQERFELTVKSVSSYNNSFELLVKDLRQWKKSGYRVALLSGSRTRA
KRLAQDLMNEGLSSFYSEDYSRPIQPGEIMVVYGHAHRGFEYPLIKFVLITESDIFGKEQ
KKRKKKKQYSGQKIQDFAELTVGDYVVHENHGLGIYRGIEKVEVDKVVKDYIKIEYRDGS
NLYILATQLDALQKYAGQEAKTPRLNKLGTQEWNRTKTRVKGAVKDIARDLVKLYATRQE
KEGFVYGTDTVWQKEFEEMFPYEETEDQIQAIEDTKRDMESTKIMDRLICGDVGYGKTEI
ALRAAFKAIQEGKQVVYLVPTTILAQQHYNTFVQRMKEFPVRVELLCRFRTPAEQRKTLE
GLKKGWVDVVIGTHRVLSKDVEYKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLTAT
PIPRTLHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYDEETVREAVQRELKRGGQVYYVYN
RVNDIAEVASRLSQLLPDVQVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDI
SNVNTMIIHDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNSILKETAEKRLSAIREFT
DLGSGFKIAMRDLELRGAGNLLGAQQHGHMQAVGYDLYCKMLNEAVKEAKGITVMEDFET
TIDLSMDAFIPNSYIANEFQKLDIYKRIAGIENQEEYEDMLEELLDRFGEPPKAVMNLLA
IATLKAAAHRAYLREIKQRGAQVKLTLHEEAKIDAAGIPILLKEYGRRLQFRAEEKPYFL
FDLNGEGILGVQNLVERLEQLAKDFAAQERQKG
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgtttgttcaaccattaagaggattagccgaatatgaagaaatcagaagcaga
atcgggagaaatcccgggctagtgcagattgccgggtgtgtggaatcccagaaggctcat
ttaatttgtgggctttctgggctttttccgtgtcggctgattctggctcaggatgagcag
agggcgaaggaactatacgaagattatcgattctacgacaagaaggtgttttactatcct
gcgaaggacttgctgtttttccaggctgatattcatggcaatctgctgattaaacaaagg
atgcaggtggttcgggcacttttggaggaggagagcgtgacggtggtgaccagcgtcgac
ggatgcatggactatctcatgcctctaggacagatcaaagagaatctggtctgtctaaat
agtgagagcacgatagatttagaggaactgagcaaaaagttggtatggctgggctatgag
agggttccccaggtggagcgctctggccagttcgcggtgagaggcggaattttggatatc
tattccctgacagaggaaaatccttggaggattgagatgtggggggacgaggtggattcc
atcaggagttttgacgcgtacagccagagatctattgaaaatctagagacgattacgatt
tatccggcggcggaacgtctgggggagaaaggaatggtctcttttgccgattattttcca
gtggagaagacgctgcttatcctggatgaacccaatcgaatgcttgagaaagggcaggag
gtggaggatgaatttcgtcagagccagaaaaaccgcttggagaagggtaaccggcctttg
gcggacaatctcttgtttgagatctcaaagctgtgtggaaaattgaaccgataccatggg
gcggctctgtgcatgatggaaccagcaaagaagttttggaaggttcaggagcggtttgag
cttaccgtgaagtctgtgagttcttataacaacagctttgagttgcttgtcaaggactta
agacagtggaaaaaaagcggataccgtgtagcactgctgtccggttccagaaccagagca
aagcgtctggcccaggacttgatgaacgaggggctgagcagtttttacagtgaggattac
agccggcccattcagcccggggagattatggtcgtctatggtcacgctcaccgggggttt
gagtatccgttgataaaatttgtactgattacggaatccgatatctttggaaaggaacag
aaaaaacggaagaagaaaaagcagtattccgggcagaagatacaggatttcgcggaactg
accgtgggagactatgtggtgcacgagaaccatggcctgggaatctaccgaggaatagag
aaggtggaagtggataaggtcgtcaaggactatatcaaaattgaataccgagacggaagc
aacctctatatcttggcaacacagttggacgcactgcaaaaatatgctgggcaggaggcg
aagacgcctcgtctgaataaactgggaacccaggagtggaaccgtaccaagaccagagtt
aagggggcagtaaaggatattgcccgcgacttagtgaagctgtatgcgacacgtcaagag
aaggaaggctttgtctacggtacggatacagtctggcagaaggaattcgaagaaatgttt
ccctacgaggagacggaagatcagattcaggccattgaggacaccaagagagatatggag
agcacgaagatcatggaccgtctgatctgcggcgatgtgggatatggaaagacagagatc
gcccttagggccgcattcaaagcgattcaggagggaaagcaggtggtctatctggttccg
acaacaattcttgcccagcagcattacaatacctttgtgcagcgcatgaaagagtttccg
gtaagggtggaacttttgtgtcggttccggacaccggcggagcagaggaagacgctggaa
ggattaaagaaaggctgggtggatgtggtcatcgggactcatcgggtcctttctaaggat
gtggagtataaagatcttgggctattgattattgatgaggaacagcgcttcggggtgact
cacaaggaaaagattaaaaagctgaagaacaatgtggatgtgttgactttgacggccaca
ccgattccacgaactttgcacatgagtctgattggaatccgagatatgagtgtgctagaa
gaaccacctatggaccgaatgccgattcagacttatgtgatggaatacgatgaagagacc
gtcagagaggccgttcaaagagagctaaaaaggggaggccaggtctactatgtctataat
cgagtcaatgacattgccgaggtggcgtcacgcctatcccagcttttgccagatgtccag
gtggggtttgcacacggacagatgagtgagcgggaattggaaaaagtcatgtatgagttc
atcaatggggagctggatgttctggtgtccacgacaattatagagacgggattggacatc
tccaacgtgaatacaatgattatccatgattctgaccggtacgggctgtcccagctctat
cagctgcggggaagaattggaagatctaaccggactgcctatgcgtttttgatgtatcga
aagaactccattttgaaggagactgcggaaaaacgcctgtcggctatccgggagtttacg
gatttgggtagcgggttcaagattgccatgagggatttggagctgagaggggcaggaaat
ttgctgggagctcagcagcacggacatatgcaggcggtggggtatgatctgtactgtaaa
atgttgaatgaggcggtcaaggaggcaaagggaatcaccgtcatggaggactttgagact
actatcgacttgagtatggatgcattcattcccaattcctatattgccaatgaatttcaa
aaactggatatctataaacgaattgcaggaattgagaatcaagaggaatatgaagatatg
ttggaagagcttctggacaggttcggagaaccgccgaaagcagtgatgaatcttttggca
attgccaccttaaaggcggcggcccacagggcatatctaagggagatcaaacagcgggga
gcacaggtgaaattaactctgcatgaggaagctaagattgatgccgcggggattccgatt
cttttgaaggaatatggccgaaggttacagtttcgggcggaagaaaaaccatattttttg
tttgatctgaatggagaaggaatactcggagtgcagaatcttgtagaacgtctggagcag
cttgcaaaagatttcgctgcccaggagaggcagaaaggctga
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integrated database retrieval system
