Brachyspira hyodysenteriae WA1: BHWA1_01006
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Entry
BHWA1_01006 CDS
T00865
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhy
Brachyspira hyodysenteriae WA1
Pathway
bhy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BHWA1_01006 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhy03400
]
BHWA1_01006 (mfd)
Enzymes [BR:
bhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHWA1_01006 (mfd)
DNA repair and recombination proteins [BR:
bhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BHWA1_01006 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
Fer4_20
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACN83489
UniProt:
A0A3B6V9E7
LinkDB
All DBs
Position
1172593..1176336
Genome browser
AA seq
1247 aa
AA seq
DB search
MHNNESIYSELIERFSKSEEFLNFDIKTVKSLTGLKGGSDSLFFSSLFNKNESILIIKEN
ESDAMLLSQSLNFYNIPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITT
VNAVTRKLPNRDDLKKLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIV
DVFSVEYNNPIRIELFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFIN
NNEIEDELKDNIIKRKYFAGSENLLPIFYKDLETIFDYFDYGYIFTDDALKLKNKFITII
DTIKENFNDIDNIFNIIEDIYKLYIDSNYFAEIVKKAINISPFITDIDIYKFHFEEGISF
KSRLTDFLDYVKEYREKDYLIILSTGHNDQALRFYKIMQDLSPTIITENDIEDTEDIKDK
EENSDNKEINNDIKENDDNNEDNKEIILEDTNKKEEIKKDYSKNENNFYIITAQSSSGFI
KDDIKTIFIADWEVFGRKRKKVRKIPKVNKNLIETFVDLNVGDYAVHVNYGIGKYLGLTR
KMSNGKEKDYITLEYAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAR
EDALATARELIKLYAIRSNIRGNVYGPDTQWQDDFEASFRYEETVDQLRAINDIKEDMES
GKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFEDFPI
KIEVLNRFVTSKQAKRNKELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKH
KEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAV
VNAIERELKREGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFI
NHKYDILVSTTIIENGIDIPNANTILIDNANKLGLSELYQLRGRVGRSDREAYAYMFYPS
DLALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELYTQM
LEEAANEYKGEIKEVTFDTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQRDEDIEYSK
EFMIDKYGKLPKELEDIFDIAKVKIILKRMRILSVIEGHYNIYLKLDKLSKIDTDKLINL
INTKNSGVYFDKDNLNQLIIPVIHEKENDIEWKLEKIRNVILAIESENYTADTDSKNENN
ESNTNKEDNKKENSKMSIAEANLKNNKTNKKRTISRKSPKLIKVNKK
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgcataataatgaatcaatatatagtgaattaatagaaagattttcaaaaagcgaagaa
tttttaaatttcgatattaaaacagttaaaagtttaacaggactaaaaggcggaagtgat
tctttatttttttcttctcttttcaataaaaatgaaagtattttaataatcaaagaaaat
gaaagcgatgctatgcttctaagccagtctttaaatttttataatatacctaattactat
tttcctgattatgatacagttccttttaccaaaatgtcgcctgttagtgatatagcacag
gatagaataaatatattgtataaattgataaataaagaaaaatgtataataataacaact
gtaaatgctgtaactagaaaattacctaatagagatgatttgaaaaaactgcctatacat
ttaaatgtaggcgataaattggatttggataatttaagattaacattatacgatttggga
tatgttatagaaagagaagttgctgaaaaaggtacagcttctgttagaggaagtatagta
gatgtattttctgttgaatataataaccctattagaatagaattatttgatgatgaaata
gaaagcataagattatttaatatagaagacggaagatcttttaaaagtgtagaaaatata
atcatttatcctgtaagagaaactatttacagtgattcggcggtaagtgaatttataaat
aataatgaaattgaagatgaacttaaagacaatataataaaaagaaagtatttcgccgga
agtgaaaatttactgcctattttttataaagatttagaaactatatttgattattttgat
tatggatacatattcactgatgatgctttaaaattaaaaaataaatttattactataata
gacactataaaagaaaatttcaatgatatagataatatatttaatataatagaagatatt
tataaattatatattgatagtaattattttgctgagatagtaaaaaaagcaataaatatc
tcccctttcataacagatatagatatatataaatttcattttgaagaaggtatttctttt
aaatccagattaacagattttcttgattatgttaaagaatatagagaaaaagattattta
atcattctatctacaggacataatgatcaggcattgagattttataagataatgcaggat
ttatctcctactattataactgaaaatgatattgaagatacagaagatattaaagataag
gaagaaaattctgataataaagaaataaacaatgatattaaagaaaacgatgataataat
gaagataataaagagataattcttgaagatactaataaaaaagaagaaattaaaaaagat
tattcaaaaaatgaaaataatttttatataataacagcacagtcatcatctggcttcata
aaagatgatattaaaacaatattcatagcagactgggaagtattcggaagaaaaagaaaa
aaggtaagaaagatacctaaagtcaataaaaacttaatagaaacatttgttgatttgaat
gtaggagattatgctgttcatgtcaattatggtataggaaagtatttaggccttacaaga
aaaatgtccaatggaaaagaaaaagactatataacattggaatatgccaaaggagataaa
ctttatatacctgtagagcagatgaacttcgtgcagaaatatatatcagggcatggtgaa
gctcctaaattaactcagttaggcggaagtgcttgggataaaataaagagcaaggcaaga
gaggatgcattagctactgcaagggaattaataaaactttatgctataagatctaatatc
agaggaaatgtttatgggcctgacactcaatggcaggacgattttgaagcttcgtttcgt
tatgaggaaactgttgatcagttaagggctattaatgatataaaagaagatatggaaagc
ggaaagatgatggatagacttgtatgcggtgatgttggatttggaaaaacagaagtggca
ttcagagctgtatttaaagctataatggcaggaaagcaatgtgctatattatgccctact
acaatattatcacaacaacattacaataatgccaaaaaaagatttgaagattttcctata
aaaatagaagttttaaatagattcgttacaagcaaacaagcaaaaagaaataaagaatta
ttaaaagaaggttcatgcgatttgatagtaggaactcatatgttattatcaaaagatata
gagtttaaaaatctaggacttatagttatagacgaagagcagagattcggagttaagcat
aaagaggcattaaaaaaattaagattagaaactgatgttcttactctttcagctactcct
atacctagaactttaaatatggctttaacaggaataagagatataagcataatagaaact
cctccattaaatagaatacctgtaaaaactttcgttactgagttcagcgaagatgctgtt
gtaaatgctatagagagagaattgaaaagagaaggacaagtattctatctttataacaga
atagatactatagaatcattcgcacttatgataaaaaaactttgtcctaaagcaagaata
tgcgttgcccatggaagaatgacaggacatcagcttgaaaaaataatgggcgattttatt
aaccataaatatgatatattagtatcaactacaataatagaaaatggaatagatatacct
aatgccaataccatactaatagataatgcaaataaattaggattatccgaactttatcaa
ttaagaggaagagttggaagaagcgacagagaggcttatgcttatatgttctatcctagt
gatttagcattaacagaagttgcatataaaagacttgaagctatatccgagcatactgat
ttaggggcaggattcaaaatagctatgcgtgatttagaaataagaggagctggaaatatt
ttaggcaaagagcaatccggtatgatatatcaggttggctatgaattatatactcaaatg
cttgaagaagctgcaaatgaatataaaggtgaaataaaagaagtaacattcgatacagtt
atagacttaaagcataatttatttattcctgattcttatatagcagattcaaaagaaaaa
atatccgcttataaattaataatgcgttctcaaagagatgaagatattgaatattctaaa
gagtttatgattgataaatatggaaagcttccgaaagaattggaagatatttttgatata
gcaaaagtaaaaatcatattaaaaagaatgagaatattatctgttatagaagggcattac
aatatatatcttaaacttgataaactttcaaaaatagatactgataaacttataaattta
atcaatacaaaaaattcaggagtttattttgataaggataatcttaatcaattaataata
ccggttatacatgaaaaagaaaatgatattgaatggaaattagaaaaaataagaaatgtt
attctggcaatagaaagtgaaaattatacagcagatactgattctaaaaatgaaaataat
gaaagcaatacaaataaagaagataataaaaaagaaaactctaaaatgagcatagcagaa
gctaatctaaaaaataataaaacaaataaaaaaagaacaatatcaagaaaatctcccaaa
ttaataaaagtaaataaaaaataa
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