Bordetella hinzii: ACR54_02552
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Entry
ACR54_02552 CDS
T04004
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bhz
Bordetella hinzii
Pathway
bhz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACR54_02552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhz03400
]
ACR54_02552
Enzymes [BR:
bhz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACR54_02552
DNA repair and recombination proteins [BR:
bhz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACR54_02552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKQ55867
UniProt:
A0A0H4VZB9
LinkDB
All DBs
Position
2651958..2654330
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AA seq
790 aa
AA seq
DB search
MADKLRAYRRKRDFEASPEPRGGTPDGGQPLFVVQKHAARRLHYDFRLQIGGVLASWAVP
KGPSMDPGVKRLAVHVEDHPLDYAQFEGDIPAGHYGAGHVDIWDSGHWEARGNAARGLAQ
GHLRFRLHGRRLHGDWLLVRTHGEQWLLRKVRDTAPARPAPAARAALPGKAAAMPRQLRP
PLATLAERPPPDAGWRYEVKYDGYRMLCELRPGRVRFISRSGHDWTARMRPLAEAIAALK
LGQGWLDGEVVVFDRHGISDFQLLQNALDGEADGLRFVVFDLPYWEGRDLRGMPLSVRQH
WLEVLLEHAPAPLMLTQRLALADVHEANQAWTQACQLHLKGLIAKRADAAYRPGRGHDWL
KLKCRPRQEFVIGGYTPPSGARQHFGALLLGLRRGKRLQYVGRTGTGFTDASLRRLMARL
RPLAQADCPFVQRPPDSGQAHWVRPELVAEVAYAGVTADQRLRQAAFIALREDKPAAQVD
DPAPEPPARPRRTAMPDRIGKIAITHPDRIVLRDPDTSKLELARYYEAIGPRILPHLQKR
RVALVRYPDGADKPGFFQKHITTDLPKGVSRDAAGDLTIDSLEGLIALVQLGVIELHTWG
SRAPKTEAPDRLTLDLDPGEGVDWRAIVEGAQLARGLMQEVGLVPFLKSTGGKGLHLVAP
LKPIAGWEDVKTLAHGLASRLESVLPGRFVANMAKAKRRGRIFVDYLRNGNGATAIAAFS
VRGRAGGPVSMPLPWELLDAGEDLRGPAFNLRNARQWAETHPDPWADYAASRRQVGPRML
ARLGLEPAQG
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagctgcgcgcctaccggcgcaaacgcgacttcgaggccagccccgagccg
cggggcggcaccccggacggcggacagcctctcttcgtggtgcagaaacatgcggcgcgg
cgcctgcactatgacttccgcctgcagatcggcggcgtgctggccagctgggccgtgccc
aagggtccttccatggaccccggggtcaagcggctggcggtccatgtcgaagatcatccg
ctggactacgcccaattcgagggcgatatccccgccggccactatggcgcggggcatgtc
gacatctgggacagcggccattgggaagcccgcggcaatgcggctcgaggcctggcgcaa
ggccatctgcgcttccgcctgcatggacggcgcctgcacggcgattggctgctggtccgc
acccatggcgagcaatggctgctgcgcaaagtccgcgacacggcccccgcacgacccgcg
cccgcggcacgcgcggccttgcctggcaaggccgccgccatgccgcgccaactgcgcccg
cccctggcgaccctggccgaacgcccgccgcccgatgccggctggcgctacgaagtcaag
tacgacggctaccgcatgctgtgcgaactgcgcccgggcagggtgcgcttcatcagccgc
agcggccatgactggaccgcccgcatgcggccgctggccgaggcgatcgccgcgctgaag
ctgggccagggctggctggacggcgaggtggtggtgttcgaccgtcatggcatctccgac
ttccagctgctgcagaatgcgctggacggcgaagcggacggcctgcgtttcgtcgtcttc
gacctgccctattgggaagggcgggatctgcgcggcatgccgctgtccgtgcgccagcac
tggctggaagtgctcctggagcacgcgcccgcgcccttgatgctgacacagcggctggcg
ctggccgacgtccacgaggccaaccaggcctggacccaggcctgccagctccacctcaaa
ggcctgatcgccaagcgcgccgatgccgcctaccgccccggccggggccacgattggctg
aaactgaaatgccgcccgcgccaagagttcgtcatcggcggctacaccccgccgtccggc
gcgcggcagcatttcggcgccctgctgctgggtctgcgccgcggcaagcgcctgcaatac
gtgggacgcaccggcaccggcttcaccgacgccagcctgcgccggctgatggcgcgcctg
cggccgctggcgcaggccgactgccccttcgtgcagcgcccgcccgacagcggccaggcc
cattgggtccgccccgagctggtggccgaggtcgcctatgccggcgtcaccgcggaccag
cgcctgcgccaggccgccttcatcgccctgcgcgaagacaagccggccgcccaggtcgac
gaccccgcccccgaaccgcccgcccgacccaggaggacagccatgcccgaccgtatcggc
aagatcgccatcacgcatccggaccgcatcgtcctgcgcgaccccgacacgagcaagctg
gagctggcgcgttactacgaggccatcggcccgcgcatcctgccgcatctgcagaaacgc
cgcgtcgccctggtccgctatccggacggcgccgacaaacccggttttttccagaagcac
atcaccacggacctgcccaagggcgtgagccgcgacgccgccggcgacctgaccatagac
agcctggagggtctcatcgcgctggtgcagctgggcgtgatcgagctgcatacctggggg
tcgcgcgcgcccaagaccgaggcgcccgaccgcctgacgctggacctggatcccggcgaa
ggcgtggactggcgcgccatcgtcgaaggcgcccagctggcgcgcggactgatgcaggag
gtcggcctggtgccctttctcaaatccaccggcggcaaggggctgcacttggtggcgccg
ctcaagcccatcgccggctgggaggatgtcaagacgctggcgcatggcctggcctcgcgg
ctggagagcgtgctgcccgggcgcttcgtcgccaacatggccaaggccaagcggcgcggc
cgcatcttcgtggactatctgcgcaacggcaatggcgcgaccgccatcgcggccttttcg
gtgcgtggacgcgccgggggcccggtatccatgcccctgccctgggagctgctggacgcc
ggcgaggatttgcgcggcccggccttcaatctgcgcaacgcgcgccaatgggccgagacc
catcccgatccctgggccgactacgccgccagccgccgccaggtcggcccgcgcatgctg
gcccgcctgggcctggagcccgcgcagggctga
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