Bizionia sp. M204: GMA17_14185
Help
Entry
GMA17_14185 CDS
T08096
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bia
Bizionia sp. M204
Pathway
bia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GMA17_14185 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bia03400
]
GMA17_14185 (mfd)
Enzymes [BR:
bia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GMA17_14185 (mfd)
DNA repair and recombination proteins [BR:
bia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GMA17_14185 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Syntaxin-6_N
Motif
Other DBs
NCBI-ProteinID:
UPS92801
LinkDB
All DBs
Position
complement(3105101..3108442)
Genome browser
AA seq
1113 aa
AA seq
DB search
MSKSILSQTYAQALQTQNLQTAIAQTENRTHVKGLVGSAFSLVISEAFKQADKPFLLVFN
DKEEAAFHLNDLEAMLNDKDVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAI
IITYPDALFEKVVTRRELDKNTLKISVTDNLSIDFVNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDDVDSIRTFDVETQLSTDQIKKISIIPNVANKFLDESRQ
SFLKYIAQKTVVFTKNADLVFDRIDDFYSKAEEAFKNLTSELKHAEPETLFCNATELKKQ
LLDFNLVEFGSKAVFASQDNIITFNTTPQPAFNKQFNLLIDDLNLHHDKGYTNYIACVSE
QQAKRFHDIFDDAEQTVHYKTIVLSLYQGFVDHDNKITCYTDHQIFERYHKFHLKNGYAK
KQAITLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGNKQEAIKLIYGERDVLYLSIHS
LHKITKFNGKDGKPPKVYKLGSKAWKTLKAKTKSRVKEIAFNLIQVYAKRKLEKGYQYQP
DSHMQHELEASFIYEDTPDQSTATADVKADMESERPMDRLVCGDVGFGKTEVAIRAAFKA
VDNGKQVAVLVPTTILAYQHSRTFRERLKDFPVTVDYLNRFRTAKEKRETLANLESGAVD
IIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQF
SLMAARDLSVITTPPPNRYPIESHVIRFTEESIRDAVTYEIQRGGQIFFIHNRIENIKEV
AGMIQRLVPDAKIGIGHGQMEGKKLEQLMLAFINGEFDVLVSTTIVESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTEDARKRITALEQFSELGSGFNI
AMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIDELKETEFADLYEDDGKEKEYV
KDITIDSDFELLFPDDYVNNIAERLTLYTKLNEVKTEDELLKLESDIRDRFGELPTQVED
LMNSVRIKWVATKIGLEKVVMKQNKLIGYFITDQKSGFYQSPNFTRVLQFVQSHPQACKM
KEKQTRNGLRLLLTFENIKSVDKALQVLKPIVA
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatccatcctctcgcaaacatacgcacaggctttgcaaacgcaaaatctgcaa
actgctattgcccaaactgaaaatcgcacacatgtaaaaggccttgttggctcggcattt
tctctcgttattagtgaagcttttaaacaagcggacaaaccgttcttactcgtttttaac
gataaagaagaagcggcttttcacctcaacgatttggaagccatgttgaatgataaagat
gtacttttttatccaggtagctacagaagaccgtatcaaattgaagaaacggataatgcc
aatgttttattacgttctgaagttttaaaccgcatcaactcccggaaaaaaccagccatt
ataatcacttatccagatgcgctttttgaaaaagtagtaacgcgtagagagttggacaaa
aacacgttgaaaatttcggttactgacaatttatccattgattttgttaacgaagtcctt
ttcgaatacaaatttaaacgtgttgattttgttaccgaacctggggaattttcagtgcgt
ggtggtattgtagatgtgttttcattttcccatgacgaaccctaccgaattgaatttttt
ggtgatgatgttgatagtatccgaacctttgatgtggaaacacaattgtccacagatcag
attaaaaaaataagcatcattccaaacgttgcaaataaatttcttgacgaaagcagacaa
agtttcttaaaatacattgcccagaaaaccgttgtttttacaaaaaatgccgatttggtt
ttcgatagaattgacgatttttatagcaaagccgaagaggcttttaaaaatctaacgtca
gaactcaaacatgctgagcccgaaaccttgttttgtaatgcaaccgaattaaaaaagcaa
ttactggatttcaatttagtagaatttggtagcaaagccgtttttgcttcacaagacaat
ataattacattcaacaccacaccacaaccggctttcaataagcaattcaacttattgata
gacgatttaaacttgcatcatgacaaaggctacaccaattacattgcctgtgttagtgaa
cagcaagccaaacggtttcatgatatttttgatgatgcggaacaaaccgttcattataaa
accatcgtcctgtctttataccaaggatttgtagatcatgataataaaattacctgttat
acggatcaccaaatatttgagcgctatcataaattccatttaaagaatggctatgctaaa
aagcaggctataactttaaaagaactaactaatttagatattggcgattatgtaacgcat
attgatcatggaattggtcgctttggaggtcttcaaaaaatagatgttgaaggcaataag
caagaagccattaaactaatttatggcgaacgtgatgtgctgtatttaagcattcactcg
ttacataaaatcaccaaatttaatggtaaagatggtaagccgccaaaagtttacaaatta
ggaagtaaagcctggaaaacgcttaaagcaaaaacgaagtcgcgcgttaaggaaattgcg
tttaatttaattcaagtttatgccaaacgaaaattagaaaagggctatcaatatcaacca
gacagccatatgcaacatgagctagaagcctcttttatttatgaagatacaccagaccaa
agtaccgcaacggccgatgtaaaagcagatatggaaagtgaacgtcctatggacagactg
gtttgtggtgatgtgggttttggtaaaacggaagtcgctattcgtgctgcttttaaagcc
gttgataatggaaagcaggttgccgttttagtgcccacaactattttggcttatcaacat
tcccgtacatttagagagcgtttaaaggatttcccagttacggtagattatctaaatcgt
tttagaacggctaaagaaaaacgtgaaacactagctaatctagaatctggagctgtagat
attattattggcacacaccaattggtgaataaaaatgtcaagtttaaagatttaggtttg
ctaattgtagatgaagagcagaaatttggcgttgccgtaaaagaaaaattaaaaacctta
aaagacaatgtagatgtcctgaccttaacggcaacaccaattccaagaaccttgcaattt
agcttgatggctgctcgcgacttatcagttattacaacgcctccacctaatagataccca
atagaaagtcatgtcattcgatttaccgaggagagcattcgcgatgctgtaacttatgaa
attcagcgcggtggacagatatttttcatccacaaccgcattgaaaacatcaaggaagta
gcaggtatgattcaacgactagttcctgacgctaaaattggcattggtcacggccaaatg
gaagggaaaaaactagagcaattgatgttagcttttattaatggtgaatttgatgtatta
gttagtaccaccattgtagaaagcggtttagatgttccgaatgccaacactatttttatt
aataacgcgaataattttggcttaagtgatttgcaccaaatgcgcggacgcgtagggcga
agcaataaaaaagctttttgttatttcattacaccagaatattcggctatgaccgaagat
gctagaaagcggattacagctttggagcaatttagcgaattaggcagcggttttaatatt
gccatgaaagatttagaaattcgtggtgctggcgatttattaggtggtgagcaaagtggt
tttataaacgacattggttttgatacctatcaaaaaattctaaatgaagccattgacgaa
ctgaaagaaaccgaatttgcagatttatatgaagatgatggtaaagaaaaagaatacgtt
aaagacatcacgatagacagtgattttgaattactatttccagatgattatgtgaataat
attgccgaacgtttaacgctgtacaccaaattaaatgaggttaaaacagaagatgaactt
ctaaaactagaaagcgacatacgcgatcgttttggggaactaccaacccaagtagaggat
ttaatgaatagtgttcggataaaatgggtagcaactaaaataggccttgaaaaagtagtg
atgaaacaaaataaactgattgggtattttattaccgatcagaaaagtggtttttatcaa
agtcccaattttacacgtgtattacaatttgtacaatcacatccgcaagcttgtaaaatg
aaagaaaagcaaactagaaatggcttgcgactattattaacctttgaaaacattaaaagt
gttgacaaagctttacaggttttaaaacctattgtggcataa
DBGET
integrated database retrieval system
