Beijerinckia indica: Bind_1347
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Entry
Bind_1347 CDS
T00688
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bid
Beijerinckia indica
Pathway
bid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bind_1347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bid03021
]
Bind_1347
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_1347
Enzymes [BR:
bid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bind_1347
Transcription machinery [BR:
bid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bind_1347
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bind_1347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RelB
Motif
Other DBs
NCBI-ProteinID:
ACB94987
UniProt:
B2IK55
LinkDB
All DBs
Position
1555240..1559403
Genome browser
AA seq
1387 aa
AA seq
DB search
MAQSLAQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLLVDEPKGGRPDEGLQSV
FKSVFPISDFSGTALLEFVKYEFELPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTG
AKSVKDIKEQDVYMGDMPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL
LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPATSVLYALGMDGEEILSTFYKTIVY
TRDKDGWRIPFDAERMKGMKAAIDLIDAESGEVVLEAGKKLTVRTARQLAERGLKFIKAQ
DEDLHGQYIASDLYNPQTGEIFAEAGEEISAKTLTTLVDSGFEEIPVLDIDHINIGPYIR
NTLAVDKNNSREDALFDIYRVMRPGEPPTLETAEAMFHSLFFDPERYDLSAVGRVKMNMR
MDLDAADTVRILRKADIVAVMRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLGL
LRMERAIKERMSSVDIDTVMPQDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHKR
RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIE
APYRRVRDNHVTDDVVYLSAMEESKYYVAQADAKVDADRGLVEDLIVCRHAGDVIMVPRE
RVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEAVV
ARDSGAAIAARRTGYIDQIDATRIVIRATEETDAGKPGVDIYRLMKFQRSNQSTCVNQKP
LVRVGDFVRKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLNERIVKDDVFT
SIHIDEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILVGKITP
KGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERAQAIE
REEIERLAKDRDDELAILDRNVYTRLIDLLDGKKAIAGPKGFKKETVLSRSVIEEYPRSQ
WWTFAIESDQLMAEIEAMRKQYDEAKKGLENRFLDKVEKLQRGDELPPGVMKMVKVFVAI
KRKIQPGDKMAGRHGNKGVVSKIVPQEDMPFLADGQPVDIVLNPLGVPSRMNVGQILETH
LGWACAGLGKQVSEAVNAYLRQQDTQPIRDKLIEIYGEGQREQISALDEETLVEVGENLR
RGVPIATPVFDGAREKDIVAMLEEAGLDHSGQVTLYDGRSGEAFDRKVTVGYIYMLKLHH
LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
VAGRTKVYESIVRGDDAFESGIPESFNVLVKEMRSLGLNVELNMAPKLTDQQQQQPSPEQ
PPAEAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatctttggcgcagacattcaccggccgcaagcgtgtccgtaaattcttcggc
catatccgcgaagttgcggaaatgcccaatctgatcgaggtgcagaaagcctcctacgat
caattcctgctcgtcgacgagccgaagggcggccgaccggacgaaggcttgcaatcggtt
tttaaatcggtctttcccatttccgatttctccggcacggctttgctcgaattcgtcaaa
tatgaattcgaactgccgaaatatgatgtcgatgagtgccgtcagcgcggcatgaccttc
gccgcgccgctgaaggttaccttgcgcctgatcgtctttgatgtcgaccccgatacggga
gcgaaatcggtcaaggacatcaaggagcaggatgtctatatgggcgatatgcccctaatg
acgatgaatggtacgttcattgtcaatgggacggagcgcgtgatcgtctcgcagatgcat
cgttcgccgggcgttttcttcgatcacgataaaggcaaaagccattcttccggcaaactc
ctgtttgccgcccgcatcatcccttatcgcggttcctggctcgatatcgaattcgatgcc
aaggacatcgtctatgcgcgtatcgatcgccgccgcaaaattccggcgacatcggtgctt
tatgcgctgggcatggatggtgaggaaattctctccactttctacaagaccatcgtctat
acgcgcgataaggatggctggcgcattcccttcgacgcagagcgcatgaagggcatgaag
gcggcgatcgatctgatcgatgcggaaagcggcgaggtcgtgctggaggcgggcaagaag
ctcaccgtgcgcacggcgcggcaattggcggagcgcggcctcaaattcatcaaggcacag
gacgaggatctgcacggtcaatatatcgccagcgatctctataatccgcagacgggtgag
atcttcgccgaggccggcgaggagatcagtgcgaaaacactgacgacccttgtcgattcc
ggtttcgaagagatcccggttctcgatatcgaccatatcaatatcggaccctatatccgc
aacaccttggcggtcgacaagaacaattcgcgcgaagacgctttgttcgacatctatcgc
gtgatgcgtcctggcgagccgccgacgctcgagactgcggaagcgatgtttcattccctg
ttcttcgatcccgagcgctatgatctctcggcggtcgggcgcgtgaagatgaacatgcgc
atggatctcgacgcggccgatacggtgcgtattctccgtaaagccgatattgttgccgtc
atgcgcgcgctcgtggatctgcgcgatggacgtggcgaaatcgatgatatcgaccatctc
ggcaatcgccgagtccgctcggtcggcgaattgatggagaaccaatatcgcctcggcctg
ctgcgcatggaacgggccatcaaggaacggatgtcctcggtcgatatcgacacggtcatg
ccgcaggatctgatcaatgcgaaaccggcggcggcctccgtccgcgaattcttcggttcc
tcgcaattgtcgcagttcatggaccagaccaatcctctgtccgagatcacgcataaacgg
cgcctctcggccttgggaccgggcggtctgacgcgtgagcgcgcgggcttcgaagtgcgc
gacgtgcatccgacccattatggccgtatctgtccgatcgagacgccggaaggcccgaat
atcggtcttatcaactcgctcgcgaccttcgcgcgtgtcaataaatacgggtttatcgag
gcgccttatcgccgggtcagggataatcacgtcaccgatgacgtcgtctatctttcggcg
atggaagagagcaaatattacgtcgcccaggccgatgccaaggttgatgcggatcgtggc
ctcgtcgaggatctgatcgtctgccgtcatgccggcgatgtgatcatggtaccgcgcgag
cgtgtcgacttcatggatgtgtcgccgaaacagctcgtctcggtcgccgcggccttgatc
ccgttccttgagaacgatgacgccaaccgcgcgctgatgggctcgaacatgcagcgccag
gctgtgcctctggtgaaagccgatgcgccgctggttgggaccggtatggaagcggttgtg
gcacgcgattccggggcggccattgccgcgcggcgcacgggctatatcgaccagatcgat
gcgacccgtatcgtcattcgcgccacggaagagaccgatgccggcaagccgggtgtcgat
atctaccggctgatgaagttccagcgttcgaaccaatcgacctgcgtcaaccagaagcct
ttggtccgcgtcggcgatttcgtgcgcaagggcgatattatcgccgatggtccctcgacc
gatctgggtgatctggcgctcggccgcaatgtgctcgtcgccttcatgccctggaacgga
tataatttcgaggactcgatcctgctcaacgagcggatcgtcaaggatgacgtgttcact
tcgatccatattgatgaattcgaagtgatggcacgcgatacgaagctcggcccggaggaa
atcactcgcgatattccgaatgtttcggaagaggctttgaagaatctcgacgaggccggc
atcgtctatatcggtgccgaggttcaggcgggcgatattctcgtcggcaagatcacgccg
aagggcgaaagcccgatgacgccggaagaaaagctgctgcgcgccattttcggtgagaag
gcctctgacgttcgcgacacgtccctgcgtgtgcctccgggcgtgcaagggacgatcgtc
gaagttcgtgtcttcaacaggcacggcgtcgacaaggacgaacgagctcaagcgatcgag
cgcgaggaaattgagcgtctcgcgaaggaccgtgacgacgaactcgcgatcctcgaccgc
aacgtctatacgcgcctcattgatcttctggatggcaagaaggcgattgccggccccaag
ggcttcaagaaggagacggtgctgtcgcgctcggtgatcgaggaatatcctcgttctcaa
tggtggacgttcgccatcgaaagcgatcagctcatggccgagatcgaagccatgcgcaag
caatatgacgaggccaaaaaaggactggaaaaccgctttctcgacaaggtcgaaaagctc
cagcgcggtgacgaactgccgcctggcgttatgaaaatggtcaaggtctttgtcgccatc
aagcgcaagatccagcccggcgacaaaatggcgggccgtcatggcaacaagggtgtcgtc
tccaagatcgtgccgcaggaggacatgcccttcctggccgacggtcagccggtcgatatc
gtgctcaatccgctcggcgtgccttcgcgcatgaatgtcgggcagattctcgagacgcat
ctcggctgggcttgcgcagggcttggcaagcaggtgagcgaggcggtcaatgcctatctc
aggcagcaggatacgcagccgatccgcgacaagctgatcgagatctatggtgaaggtcaa
cgggagcagatcagcgctctcgatgaagagacattggtcgaggtcggtgaaaatctgcgc
cgcggtgttcctattgccacgcctgtgttcgatggcgcgcgtgagaaggatatcgttgcc
atgctcgaggaggcggggctcgatcattccggtcaggtcacgctttacgatggccgatct
ggcgaggccttcgaccgtaaggtgacggtcggctacatttatatgttgaagctgcatcat
ctcgtcgatgacaagatccatgcgcgttcgatcggtccgtacagcctcgtgacgcaacag
ccattgggcggcaaagcgcagttcggtggccagcgcttcggcgaaatggaagtctgggcg
ctcgaagcttatggtgcggcctatacgctgcaggaaatgctgaccgtgaagtcggacgac
gtcgcgggtcgtaccaaggtctatgaatcgatcgtgcgcggtgatgatgctttcgaatcc
ggtattccggaaagcttcaacgtgctggtcaaggaaatgcgttcgctcggcctcaatgtc
gaattgaatatggctccaaaattgaccgatcagcagcaacaacagccgtcgccggaacaa
ccgccggctgaagccgccgaataa
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