Beijerinckia indica: Bind_1348
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Entry
Bind_1348 CDS
T00688
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bid
Beijerinckia indica
Pathway
bid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bind_1348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bid03021
]
Bind_1348
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_1348
Enzymes [BR:
bid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bind_1348
Transcription machinery [BR:
bid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bind_1348
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bind_1348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF6744
Motif
Other DBs
NCBI-ProteinID:
ACB94988
UniProt:
B2IK56
LinkDB
All DBs
Position
1559534..1563718
Genome browser
AA seq
1394 aa
AA seq
DB search
MNQEVMNLFNPVVQPQAFDQIQISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHISLAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFESYIVLDPGLTPLKDRQLLNEEDYLKAQDEYGQDSFTA
LIGAEAIREILRNMDLPKIAEDLKVEIAESTTELKPKKLAKRLKIIEAFMHSGNKPEWMI
LTEVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVTLMRDGEPGQGMMFANMGEIEHALN
AKAITLHTKIKGRAWTFDENGEKVSKIFDTTPGRLILGQLLPHHVKIPFDVVNKLMTKKE
ISNMIDIVYRNCGQKETVIFCDRIMALGFREAFKAGISFGKDDMVVPETKPRIIEETSAL
AKEYEQQYNDGLITQVEKYNKVVDAWGKCSVKLADEMMARISAVQKDDDGRDKPINSIYM
MSHSGARGSPTQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIITIPDCHSENGIRMRAIIDAGQIVASLETRILGRTA
AEDLREADGTIIVPAGEMIEEIHVGRINAAGIQEVKIRSVLTCEAKNGVCAKCYGRDLAR
GTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADQSFIESNFEGTVKIRNRHVA
RNTDGDLMVMARNVAVVIDGPDGTELAVHRVQYGARLKVDEGDKIKRGQRIAEWDPYTRP
ILTEIDGTIGFEDLVEGASMTETIDEATGIAKRMVIDWRLNQRSASLKPAMVIKTADGKV
GKLQRGGEARYMLPVDSIIGVDPGGSVKAGDVIARISMESAKTRDITGGLPRVAELFEAR
RPKDHAIIAEASGTVQFGRDYKNKTRISIVPHEDGAEPIEYLIPKGKHIYLQDGDVVEKG
DYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVDIV
DSGDTDFLPGEQVDQLEFEEANIQAVENGGKPATGTPVLLGITKASLQTRSFISAASFQE
TTRVLTEAAVNGKADTLEGLKENVIVGRLIPAGTGAAMAKLRRVAVQRDELILAQKAETS
EAPLVPIPHLPAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtgatgaatctcttcaatccggttgtgcagccgcaggcgttcgaccag
attcagatttcgatcgccagcccggaaaagatcttgtcgtggtcctacggcgagatcaaa
aaaccggaaaccattaattaccgcactttcaagccggaacgtgatggcttgttctgcgcg
cgcatcttcggtccgatcaaggattacgaatgtctgtgcggcaaatacaaaagaatgaaa
tataagggcgtcatctgcgagaagtgcggcgtcgaggtcacgctgtcgcgcgtccggcgc
gaacgcatgggccatatttcgctcgcggctccggttgcgcatatttggttcttgaaatcc
ttgccgtcgcgcatcgggcttctgctcgacatgacgctcaaggatctcgagcgcattctc
tatttcgagtcttatatcgttctcgatccgggcctcacgcctttgaaggatcgtcagctt
ctgaacgaggaagactatctcaaggcccaggatgaatacggccaggacagtttcacggcg
ctgatcggtgcggaagcgatccgcgagattttgcgcaatatggatctgccgaagatcgcc
gaggatctcaaggtcgagatcgcggaatcgacgaccgaactgaagcccaagaaactcgcc
aagcgcctcaagatcatcgaggccttcatgcattcgggcaataagccggaatggatgatc
ctgaccgaggtgcccgtcattccgccggacctgcgtccgctggttccactcgatggtggc
cgtttcgcgacgtccgacctcaacgatctctatcgtcgtgtcatcaaccgcaacaatcgt
ctgaagcggctgatcgaattgcgcgctcccgatattatcgtgcgcaatgaaaagcgcatg
ctgcaggaagcggtcgatgctttgttcgacaatggtcgtcgtggtcgcgtgatcaccggc
gccaacaagcgtccgttgaagtcgctcgccgatatgctcaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgattattccggccgttcggtcattgtcgtcggt
ccagaattgaagttgcatcaatgcggcctgccgaagaagatggccttagagctgttcaag
cccttcatctattcgcggctcgacgccaagggcttttcggcaaccgtcaagcaggcgaag
aaactcgtcgaaaaggaaaagcccgaggtctgggatattctcgacgaagtcattcgcgag
catccggtgatgctgaaccgcgctccgactttgcatcgtctcggcattcaggccttcgag
cctaagctgatcgaaggcaaggctattcagctccatccgctcgtctgcgccgcgttcaac
gcggatttcgacggggaccagatggcggtgcatgtgcctttgtcgctcgaggcgcagctc
gaagcccgcgtcttgatgatgtcgaccaataatattctgcatccggccaatggtcagccg
atcatcgtgccgtcgcaggatatcgtgctcggcctctattatgtgacgctgatgcgggat
ggagagccggggcagggcatgatgttcgccaatatgggcgagatcgagcatgccttgaat
gccaaggcgatcaccctgcatacgaagatcaagggacgcgcctggacctttgacgagaac
ggcgagaaggtctcaaagatcttcgacacgactcctggccgtctcatccttggtcaattg
ctgcctcatcatgtgaaaattccttttgacgtcgtgaataagctcatgacgaaaaaagaa
atctcgaacatgatcgatatcgtctaccgcaattgcgggcagaaggagacggtcattttc
tgtgaccggatcatggcgcttgggttccgtgaggcgttcaaagctggcatttccttcggc
aaggacgacatggtcgtgccggaaaccaagccgcgcatcatcgaagagacgagcgcgctg
gccaaggaatatgagcagcaatataacgacggcctcatcactcaggtcgagaaatacaac
aaggtcgtcgatgcttggggcaaatgttccgtcaagctcgccgatgaaatgatggcgcgc
atttcggccgttcagaaggatgatgacggtcgcgataagccgatcaattcgatttatatg
atgagccattcgggtgcgcgtggttcgcccacccagatgaagcagctcgcggcgatgcgc
ggcctgatggccaagccgtccggcgagatcattgagacgccgatcatctcgaacttcaag
gaaggtctgaccgtccttgaatatttcaactcgacccacggcgcgcgtaaaggtctggcc
gatacagccttgaagacggcgaactcgggctatctgacacgccgtctcgtcgatgtggcg
caggatgcgatcattaccattcccgattgtcattcggagaatgggattcgtatgcgcgcg
atcatcgatgctggccagatcgtggcttctctggaaacgcgtattcttggacgcacggcg
gccgaggatttgcgcgaggccgacggcacgatcatcgtccctgccggcgagatgatcgaa
gaaatccatgtcggccgtatcaatgcggccggcatccaggaggtcaagatccgctcggtt
ctgacctgcgaggccaagaatggcgtttgcgccaaatgttacgggcgcgaccttgcccgt
ggcacgcccgtgaatatgggtgaggcggtcggtgtcatcgcggcgcagtccatcggtgag
cctggtacgcaattgaccatgcgtaccttccatatcggcggcgcggcgcagatcgcggat
cagtccttcatcgaatccaatttcgaagggacggtgaagatccgcaaccggcacgttgcg
cgcaatactgatggcgatctcatggtcatggcccgcaacgtggcggtggtgattgatgga
cccgacgggacagaactcgccgtgcaccgtgttcaatatggcgcgcggctcaaggtggat
gaaggcgacaagatcaagcgtggacagaggatcgccgagtgggatccctatacgcgtccg
atcctgaccgaaatcgatggcacgatcggtttcgaggatctggtcgaaggtgcctcgatg
acggaaactatcgacgaagcgaccggcattgccaagcgcatggtcatcgattggcggctc
aatcagcgttccgccagcttgaaaccggccatggtgatcaagactgccgatggcaaggtt
ggtaaattgcagcgcggcggtgaggcccgttacatgctgccggtcgattcgatcatcggt
gtcgatccgggcggctccgtcaaggccggtgacgtcatcgcgcgtatctcgatggaatcg
gccaaaacccgcgatattaccggtggtttgccgcgtgtcgcggaattgttcgaagctcgt
cgtccgaaggaccatgcgattatcgcagaagcctctggtacggtgcagtttggccgcgac
tacaagaacaagaccaggatttcgatcgtcccgcatgaagatggcgcggagccgatcgaa
tatctaatccccaaaggcaaacatatctatctgcaggatggggatgtggtcgaaaagggt
gattatatcgtcgacggcaatcccgccccgcacgatattctcgccatcaagggtgtcgag
gaactcgcggcctatctcgtcaatgagatccaagaagtctaccgacttcagggtgtgagc
atcaacgacaagcatatcgaagtgattgtccggcagatgttgcagaaggtcgatattgtc
gattccggcgatacggacttcctgccgggtgagcaggtcgaccagcttgaattcgaagag
gccaatatccaggctgtggaaaatggcggcaagccggcaacagggacaccggttctgctt
ggcattaccaaggcctccttgcagacccgctccttcatctccgccgcgtcgttccaggaa
acgacacgcgtgctgacggaagcggctgtcaatggcaaggcggatacactcgaaggcttg
aaggaaaacgtgatcgtcgggcgtttgatcccggcgggcacgggggctgccatggccaag
ctgcggcgggttgccgtccagcgcgatgaattgattctcgcgcaaaaggcggaaacctcc
gaagcacctctggtaccgattccgcatttgcctgctgccgaataa
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