Bacillus infantis: N288_15905
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Entry
N288_15905 CDS
T02860
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bif
Bacillus infantis
Pathway
bif03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N288_15905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bif03400
]
N288_15905
Enzymes [BR:
bif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N288_15905
DNA repair and recombination proteins [BR:
bif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N288_15905
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AGX05070
UniProt:
U5LC79
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All DBs
Position
2911588..2913426
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AA seq
612 aa
AA seq
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MKPMLPSLTFDAPDAKGWFYEVKYDGFRAILEWNEKGLSLTSRNGKPLLELFPEIRSFLE
DNLQLFHPFLPLQLDGELVYLENKHKAHFGSIQVRGRMRSEMRILEKARQSPCRLLIFDA
LKLKGKSLSALGYRERKAALENFFTSAKLPLEPDEKSTKLLQMIPGNDDFKNLWEQVILH
DGEGIVAKQEKSKWEEGKRSTLWQKYKNWKYVSCFITAYEKSNGYFYAGVYDGGRIHPIG
QFIFGLKPDEKKALMDTIKNNKREEDDRFVYVNPGICTELKYLEIYDGQMREPHFHQFRF
DLKPEQCTYSQFAEQQKNLPDDVDITHPDKPIWETPALKKIDFIHYLREISPYMLPFLKD
RLLTVIRYPHGIFGEPFYQKNAPDYTPEFVETKMSDGINYIVCNNLKTFLWLGNQLAFEF
HIPFQTIKSKGPSEIVFDLDPPSRDAFTLAIKAAIMIKEVLDHLNLTSFVKTSGNKGIQV
YIPLPDNAYTYDDTRLFTSFIADYLISKEPDLFTTERMKKNRGGRLYVDYIQHAEGKTIV
APYSARGNQYAGIAAPLFWEEVNDRLRMEEFRVDNVVKRVNKLGDPLQGYFAAKDLQAFS
PVLEFLNAEKKT
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgcttccgagccttacctttgatgcgccggatgccaaaggatggttttat
gaagtcaaatacgatggattccgggccatccttgagtggaatgaaaaggggctttctctg
acaagcagaaatggcaaaccgctgcttgaactttttcccgaaatcagatcgttccttgaa
gataaccttcagctgtttcatcctttcctgcctcttcaattggatggagagcttgtttat
ttagaaaataaacataaagcccattttggttctatccaagtaagggggagaatgcgttca
gaaatgaggattctggaaaaagccaggcaatccccatgccgcttattgatttttgatgca
ttaaagcttaaagggaagagcttatcagcactgggctacagggagagaaaggcagcattg
gagaatttcttcacttcagcaaagctcccgcttgaacctgacgaaaaaagcacaaagctt
ctccaaatgatacctggaaatgatgatttcaaaaatctgtgggaacaagtaatccttcat
gatggcgaaggaattgtggcgaaacaggagaaaagcaaatgggaggaaggcaaacgctca
actctgtggcaaaagtataaaaactggaaatatgtttcgtgttttatcacagcctatgaa
aaatccaatggttatttctatgcaggcgtgtatgatggcggaaggatccacccgatcggc
caatttatattcgggctaaagcctgatgaaaaaaaggcccttatggacacaatcaaaaac
aacaaaagggaagaagatgacagatttgtttatgtaaatccaggcatttgtacagaacta
aagtacctggagatatatgacggacagatgcgcgagccccatttccaccaattccgcttt
gacctgaagcctgaacagtgcacctacagccagtttgccgaacagcagaagaatctgcct
gatgatgtagacatcacacatcctgacaagcccatctgggaaacacccgcccttaagaag
atagacttcatccattatctgcgggaaatttccccatatatgcttccatttttaaaagat
cgacttcttaccgtcatcaggtatccgcacggtattttcggggaaccattttaccaaaaa
aacgcaccggactatacacctgagtttgttgaaacaaaaatgtcagatggaattaattat
attgtctgcaataaccttaagacatttctctggctcggcaatcagcttgcctttgaattt
catataccatttcagaccatcaaaagcaaaggaccgtccgaaatcgtcttcgatctggat
ccgccgtcccgggacgcgttcacccttgcgattaaggccgccattatgataaaagaagtg
ctcgatcatcttaacctcacatcatttgtaaaaacatccgggaataaagggattcaggtt
tatatcccgcttcctgacaatgcctacacatatgatgatacacgcctgttcacttctttc
attgctgactatctgatatccaaagaaccggaccttttcacaactgaaagaatgaagaaa
aaccggggcggcagactttatgttgattatattcagcatgcagagggaaagacgatcgtg
gcaccatattcagccagaggcaaccagtatgccggtatcgcggcaccgctgttttgggaa
gaagtcaatgaccggctcaggatggaagagttccgggtagataatgtggtaaaacgggtc
aacaaactgggagacccgctgcaaggctattttgccgcaaaagatctgcaggctttttca
ccggtgcttgaatttttgaatgcagaaaaaaagacctga
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