Bacillus inaquosorum: AN935_06980
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Entry
AN935_06980 CDS
T07179
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
biq
Bacillus inaquosorum
Pathway
biq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
biq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AN935_06980 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
biq03400
]
AN935_06980 (ligD)
Enzymes [BR:
biq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AN935_06980 (ligD)
DNA repair and recombination proteins [BR:
biq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AN935_06980 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMA52031
LinkDB
All DBs
Position
complement(1379646..1381481)
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AA seq
611 aa
AA seq
DB search
MAFTMQPVLTSSPPKGAEWRYEVKYDGYRCILRIHSAGVTLTSRNGLELNSTFPEITQFA
KTAFQHMEKDLPLTLDGEIVCLVNPCRADFEHLQVRGRLKRRDKIQESANARPCCFLAFD
LLERSGEDVSSLAYLDRKKSLYDLMSAAKLPASPDPYAKETIQYIPCYDHFDPIWEMVTK
YDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGVMTPI
ASVSHGMRDEEKSAIREIMEQHGHKTASGEFTLEPSICATVQYLTILQGTLREVSFVSFE
FHMDWTECTYAQVIRHSKPVHPKLQFTSLDKIVFEKNKKTKEDFIQYMIEVSDYLFPFLK
NRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFNDGSHEHIICEDMSTLLWLANQLALE
FHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLFDSFGITSYPKLSGNKGIQ
LYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNDLGTVAAPLYWHEVQTSLTPALFTIDTVVDRIKKQGCPFFDFYRYPQDEPL
SAILHQLQKKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttacgatgcagcccgtccttacttcgtcaccgccaaaaggagcagaatggcgc
tacgaagtaaaatatgatggataccgctgcattctccgcatccattcagcaggtgtgact
ttaactagcagaaatggcttggagcttaacagcaccttccctgaaatcactcaattcgcc
aagacagcctttcagcacatggaaaaagatcttccgctgacactcgatggcgaaattgta
tgtttggtgaacccttgtcgtgcagattttgaacaccttcaagtgcgggggcgtttgaaa
agacgagacaagattcaggaatcggcaaacgcgcggccgtgctgctttctcgcctttgat
ctgttagagcgaagcggagaagatgtatcatctcttgcatatctggatcgaaaaaaatcg
ctgtacgatctcatgtctgcggcaaagcttcctgcgtctccagatccttatgctaaggaa
accattcagtatatcccctgctatgatcattttgatcctatttgggagatggttacgaaa
tatgacggagaaggaattgtagcaaagaaaacaaacagcaaatggcttgaaaaaaagcgg
tcgtccgattggctcaaatataaaaattttaaacaagcttatgtttgtataacaggtttc
aaccccaacaatggctttctgacggtgtctgtgttaaaaaacggcgtcatgacacctatt
gcctctgtctcacacggaatgcgagatgaggaaaaaagcgccatacgcgagattatggaa
cagcacggacataaaacagcatcaggtgaatttacgcttgaaccgtcgatttgtgcaacc
gttcaatacttaacgattctccaaggtacattaagagaggtatcgtttgtcagctttgaa
ttccatatggactggactgaatgcacgtatgcgcaagtcatacgccactcaaaaccggtc
catccaaagcttcagttcacaagcctggataaaatcgtatttgaaaagaataaaaaaaca
aaggaagattttattcagtacatgattgaagtcagtgactacctgttcccatttctgaaa
aaccgtgctgtcaccgtcatccgctatccgcatggatcaaggagcgaatcgttttttcaa
aaaaataagccagactatgcgccagattttgttcaatctttcaatgatggaagccatgag
cacatcatctgcgaggacatgtccactttattatggcttgccaaccagcttgctttggag
tttcatgttccttttcaaaccattaaaagcagacgtccggctgagattgtcattgatttg
gatccgccttcacgagatgactttctcatggccgtgcaggccgcaaatgaactgaagcgg
ctgtttgactcctttggcatcacatcgtatccgaagctgtccggcaacaaaggcatccag
ctttatattcccttgtctcctgaggcatttacgtatgaagaaacacgccaatttacacag
ctgatcgcagagtactgcaccaatgcatttcccgagctctttacgacagaacgcttgatt
aaaaacaggcacggcaaattgtatcttgattatttgcagcatgcagaaggtaaaacgatt
atctgtccttattcgacaagagggaacgaccttggcactgtcgcggcaccgctctattgg
catgaggtacaaacatccttaacacccgccctgtttacgattgatactgtcgttgatcgt
attaaaaagcagggctgcccattttttgatttttaccgttacccgcaagacgagcctctt
agcgccattttacatcagttgcagaaaaagagctga
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