Bacillus spizizenii: BIS30_06445
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Entry
BIS30_06445 CDS
T05513
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bit
Bacillus spizizenii
Pathway
bit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIS30_06445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bit03019
]
BIS30_06445
03016 Transfer RNA biogenesis [BR:
bit03016
]
BIS30_06445
Enzymes [BR:
bit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BIS30_06445
Messenger RNA biogenesis [BR:
bit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BIS30_06445
Transfer RNA biogenesis [BR:
bit03016
]
Prokaryotic type
tRNA degradation factors
BIS30_06445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
TFIIE_beta
CSN8_PSD8_EIF3K
OB_Dis3
MarR_2
CsrA
Motif
Other DBs
NCBI-ProteinID:
AJW84823
LinkDB
All DBs
Position
complement(1190512..1192851)
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AA seq
779 aa
AA seq
DB search
MEKEAFMDKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRS
DRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKV
VVKLTSYPEGRMNAEGEIETILGHKNDPGIDILSVIHKHGLPGDFPADAMEQASSTPDTI
DEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQ
SVIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMNRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYVVKGTAGDIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGSPRRPREL
DSSRSRKRGKPARKRVQSTNTPVSPAPSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcatttatggataagcttctctcgtttatgaaggaagaggcatacaag
cctctgactgttcaggaacttgaggagatgttaaatattacggaagccgaggagtttaaa
gagctcgtcaaagcgttagtcgccttggaagaaaaaggacttatcgtacggacgagaagc
gaccgctatggcattccggagaagatgaatttaataaaaggaaagatttcagcacatgca
aaaggatttgcctttttgctgcctgaggatacgtcgttaagcgatgtgtttattccgcct
aatgagctgaatacggcaatgaacggcgatatcgtcatggttcgtctgaattcacagtca
agcggctccagacaggaaggaaccgtcatccgcattttagaaagagcgattcagcgggtt
gtcggtacgtatacagaaacaagaaacttcggctttgtcattccggacgacaaaaaaatc
acaagcgacatctttatcccgaaaaacgggaaaaacggtgctgcggaaggacacaaggtt
gttgtcaagctgacgagctatccagaaggccgcatgaacgcagagggcgagattgaaacc
attctcggccacaaaaatgatccggggattgatattttatcagtcattcataagcatggc
ctgccgggagattttcctgctgatgcgatggaacaggcatcaagtacgcctgacacaatt
gatgaaaaagatctgaaagaccgccgtgatctccgtgaccaggtgattgtcaccattgat
ggtgcggacgcgaaggatttggatgatgcagttaccgtgacgaagcttgatgacggaagc
tacaagcttggcgttcacattgctgatgtcagccattacgtaaccgaaaattcgccgatt
gacaaagaagcgctagaaagaggaacgagtgtgtatttggttgaccgtgtcatcccaatg
ataccgcacagactatcaaacggcatttgttccttaaatccaaaggttgaccgcctgaca
ctctcttgtgaaatgacaattaacagtcagggacaggtgacagagcacgagatcttccaa
agtgtcatcaaaacaacggaaagaatgacgtattctgatgtgaatcaaattcttgttgac
gatgatgaagagctgaaacaaaaatacgagcctcttgttccaatgttcaaagacatggag
cgtctggctcaaattctgcgcgataagcggatgaaccgcggcgccgttgattttgatttc
aaagaagcaaaggtgcttgtcgatgaagaaggggcggttaaagacgttgtcatcagagaa
cgctctgtcgccgagaagctgattgaagaatttatgcttgtggcgaacgaaacagtagcg
gagcatttccattggatgaacgtcccgtttatataccggattcacgaagagccgaatgct
gaaaagctgcaaaagtttttagagtttgtaacgacatttggctatgtggtgaaaggaacg
gcgggagatattcatccgcgcgcgctgcaaagcattctggacgctgtgcgtgacagacct
gaagaaacagttatatctactgtcatgctccgttcgatgaaacaggcgaaatacgacccg
caaagcttggggcactttggtctgtcaacggaattctatacgcatttcacatcaccgatc
cgccgttatccggacttaatcgtccaccgtctgatcagaacgtatttaatcaacggcaaa
gtcgatgaagcgacacaggaaaagtgggctgaacgcctgccggatatcgccgaacataca
tcaacgatggagcggcgtgccgttgacgccgagcgtgaaacggatgatctgaaaaaagcg
gaatacatgcttgataaaatcggtgaagagtttgacggcatgatcagctctgtgacaaac
ttcggaatgtttgtcgagctgccgaatacaatcgaaggactcgtccacgtcagctttatg
acggatgactactaccgctttgacgaacagcattttgcgatgatcggtgagcggacaggc
aacgtcttccgtatcggggatgaaatcacagtcaaggtcgtcgatgtcaacaaagacgag
cgcaacatcgactttgaaattgtcggcatgaagggctctccgcggcgtccgagagaactg
gacagcagccggagcagaaaacgcggaaagcctgccagaaaacgcgtccaaagcaccaat
acacctgtttctccagctccgtctgaggaaaaaggtgagtggtttactaagccgaagaag
aaaaagaaaaaacgcggcttccaaaacgcaccgaaacagaaacggaaaaagaagaaatag
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