Bacillus spizizenii: BIS30_17490
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Entry
BIS30_17490 CDS
T05513
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bit
Bacillus spizizenii
Pathway
bit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BIS30_17490 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bit03400
]
BIS30_17490 (ligD)
Enzymes [BR:
bit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BIS30_17490 (ligD)
DNA repair and recombination proteins [BR:
bit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BIS30_17490 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJW86796
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All DBs
Position
complement(3338718..3340553)
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AA seq
611 aa
AA seq
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MALTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSEGVTLTSRNGLELTSTFPEITQFA
KTAFQHMEKDLPLTLDGEIVCLVNPCRSDFEHIQVRGRLKRPDKIQESANARPCCFLAFD
LLERRGEDISSLSYLDRKKSLYDLMSAAKFPASPDPYAKETIQYVPCYDYFDPLWEMVTK
YDGEGIVAKKTNSKWLERKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGVMTPI
ASVSHGMRDEEKNAIREIMEQHGHKTSSGEFTLEPSICATVQYLTILQGTLREVSFVGFE
FHMDWTECTYAQVIRHSKTVHPKLQFTSLDKIIFEKNKKTKEDFIQYTIEVSDYLFPFLK
NRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLANQLALE
FHVPFQTIQSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLFDSFGITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNDLGTVAAPLYWHEVQPSLTPAMFTIDTVVDRIKKQGCPFFDFYRNPQDEPL
NAILHQLKKKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaaccatgcagccagtccttacttcatcaccgccaataggagcagaatggcgc
tacgaagtaaaatatgacgggtaccgctgtattctccgcatccattcagaaggtgtgacc
ttaaccagcagaaatggcttggagcttaccagcacctttcctgaaatcacgcaattcgcc
aaaaccgcctttcagcatatggaaaaagatcttcctctgacacttgatggcgaaatcgta
tgtttggtgaacccttgccgttcagattttgaacacattcaggtgcggggacgtttgaaa
agaccagataagattcaggaatcggcaaatgcgcgtccgtgttgctttctcgcctttgat
ctgctagagcgccgcggagaagatatatcgtctctttcgtatctggaccggaaaaaatcg
ctgtacgatctcatgtctgcggcaaagtttcctgcgtctccagacccttatgctaaggaa
acgattcagtatgtcccctgctatgattattttgatccgctttgggaaatggttacgaaa
tatgacggagaaggaatcgtagcgaagaaaacaaacagcaaatggcttgaaagaaagcgg
tcgtccgattggctcaaatataaaaactttaaacaagcttatgtttgtataacagggttt
aacccaaacaatggatttctgacggtgtctgtgttaaaaaacggcgtaatgacaccgatt
gcctctgtctcacacggaatgcgtgatgaggaaaaaaacgccatacgtgagattatggaa
cagcacgggcataaaacatcttcaggggaatttacgcttgaaccatcaatttgtgcaacc
gttcaatacttaacgattctccaaggcacattgagagaggtatcttttgtcggttttgaa
ttccatatggactggaccgaatgcacatatgcgcaagtcatacgccactccaaaacggtc
catccaaagcttcagttcacaagcctggataaaatcatatttgaaaagaataaaaaaacg
aaagaagattttattcagtacacgattgaagtcagtgactacctgttcccatttctgaaa
aaccgtgctgtcaccgtcatccgctatccgcatggatcaaggagcgaatcgtttttccaa
aaaaacaaaccggactatgcgccggattttgttcaatctttctatgacggtagccatgaa
catattgtctgcgaggatatgtccactttattatggcttgccaaccagcttgctttggag
tttcatgtcccttttcaaaccattcaaagcaggcgtccggctgagattgttattgatttg
gacccaccttcacgagacgactttctcatggctgtgcaggctgcgaatgagctgaagcgg
ctgtttgactccttcggcatcacatcgtttccgaagctgtccggcaataagggcatccag
ctttatattcccttgtcccctgaggcatttacgtatgaagaaacacgccagtttacacag
ctgatcgctgagtactgcaccaatgcatttcccgagctatttactactgaacgcttgatt
aaaaacaggcacggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgatt
atttgtccttattcgacaagaggaaatgaccttggaactgtcgcggcaccgctctattgg
cacgaggtacagccctccttaacacccgctatgtttacgattgatactgtagttgatcgg
attaagaaacagggctgcccattttttgatttttaccgcaacccgcaagatgaacctctt
aacgccattttacatcagttgaagaaaaagagctga
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