Brenneria izadpanahii: HC231_05690
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Entry
HC231_05690 CDS
T07407
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
biz
Brenneria izadpanahii
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
biz03009
]
HC231_05690 (srmB)
Enzymes [BR:
biz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HC231_05690 (srmB)
Ribosome biogenesis [BR:
biz03009
]
Prokaryotic type
rRNA helicases
HC231_05690 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTF07463
LinkDB
All DBs
Position
complement(1259231..1260556)
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AA seq
441 aa
AA seq
DB search
MTATNFSELDLDDSLLDALRDMGYERPTAIQSAAIPPAMDGRDVLGSAPTGTGKTAAYLL
PVLQHLLDFPRKKSGPPRILILTPTRELAMQVADQARKIAAHTHLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGEAIKDFAERLLNDPVEVEADPSRRERKKILQWYYRADDIKHKTALLC
HHLKQPDVTRSIVFVRKRERVHELVAWLREAGITACYLEGEMVQAKRNEAIKRLSDGRVN
VLVATDVAARGIDINDISHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRVVDELRPATKAPSAKTTGKPSKKALAKRKEKKEKEKEKTKVKVRQR
DRKNIGKRRQPARKADESAAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacagccacaaatttttccgagttagatcttgatgacagcctgttagacgccctgcgc
gatatgggttatgaacgtccgactgcaattcagtcggcggcgatcccgccagcgatggac
ggccgagacgtgctggggtccgcgccaaccggcaccggtaaaaccgcagcgtatctgctg
ccggttttgcagcatctattagatttccctcgtaaaaaatccgggccgccgcgcattctg
atcttaacgccgacgcgcgagctcgccatgcaggtcgccgatcaggcgcgcaagatcgcc
gcgcatacccatctggacatcgcaaccatcaccggcggcgtggcatatatgaaccatgcc
gaagtgtttagcgagaaccaggatgttgtggtggcgacaaccggccgtttgctgcaatac
atcaaagaagaaaactttgattgtcgcgccgtcgagacgctgatcctggatgaagcggac
agaatgctggatatggggtttgcacaggatattgaacatattgccggtgaaacccgctgg
cgtaaacaaacgctgctgttctccgccacgctggaaggcgaagcgattaaagactttgcc
gagcgcttgctgaacgatcccgtcgaagttgaggccgatccctcacgccgcgaacgtaaa
aaaattctgcaatggtactaccgcgctgacgatatcaaacacaaaacggcgctgctttgc
caccatttgaaacagccggacgtcacccgttccattgtttttgtccgtaagcgcgaacgc
gttcatgagttagtcgcctggctgcgggaagccggcattaccgcctgttatctcgaaggc
gaaatggtgcaagccaaacgtaatgaagcgattaaacgcctgagcgacggacgagtaaac
gttttggtcgcgaccgatgtcgccgcgcgcggtatagacatcaacgatatcagccacgtg
ttcaactttgacctgccgcgtaccgccgatacttatcttcatcgtatcgggcgcaccggc
cgggcgggccgtaaaggttgcgccatctctttcgttgaagcgcacgaccatttgctgctt
ggcaagatcagccgctacctgaatgaaccgctcaagccccgcgttgtcgatgagctgcgc
cctgccaccaaagcgccgagcgctaaaacgacaggcaaaccctccaagaaagcgttagct
aagcggaaagaaaagaaagagaaagaaaaagagaaaaccaaagtgaaggtgcgtcagcgg
gatagaaaaaacattggcaagcgccgacagccagcccgaaaggctgacgaatccgccgct
gaataa
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