Bradyrhizobium diazoefficiens USDA 110: bll4601
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Entry
bll4601 CDS
T00109
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
bll4601 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bja03400
]
bll4601 (mfd)
Enzymes [BR:
bja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
bll4601 (mfd)
DNA repair and recombination proteins [BR:
bja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
bll4601 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BAC49866
UniProt:
Q89LE3
LinkDB
All DBs
Position
complement(5092933..5096451)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVISDLARAIAARPKKPAVSLAVVCRDGARM
QQLERALQFFAPDLPVLTFPAWDCQPYDRVSPHGGILAQRLTTLARLAPLTGSDKPLIVL
TTVNAIVQRVPARELVAAQALSVAPGNVVPMDTIIAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRSFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAVIAIEPQAE
DAVRERFKQILDYYQARREAMEHPGGGAIYKPLPPDRLYFTEEEWTRRLGDVPLVRLTQF
SVPADGTGVVDAGARKGRDFAPERNDTTVNVFESVVSHVMALQAQRKKVVITLWSEGSRD
RMTSMLRDHKLAHTTSVNSWRTVQATPRNETMLAVLGLDSGFETDEIALISEQDILGDRL
VRPRRASRKLDNFISEVTSLAAGDIVVHVDHGIGRFVGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIADELIKIAAARHLH
EAPKLPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHARTFTERFKGFPVNVAQASRLIPTKELNQVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITTQAERRLIVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPSITIGMPVLIPEDYVSDLSVRLSLYRRLADLDTEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRRANVEKIDAGPKGAVIAFRDNSFAYPDRLVTFIRSHGQAAKVRPDMKVV
FLQDWETPEDRLAGTTEIMRQLAQLAQAKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggggatgaagtcgccggccgagctgctcacgcccggccgcgccctaacgctt
gccaatgtcgctgaaggtgccgaaggcctcgtcatctcggatctggcgcgcgccatcgcg
gcgcggccgaagaagccggccgtcagccttgcggtggtctgccgcgacggcgcgcggatg
cagcagctcgaacgcgcgctgcaattcttcgcgcccgatctgccggtgctgaccttcccg
gcctgggactgccagccctatgaccgcgtctcgccgcatggcggcattttggcccagcgc
ctgaccacgctggcgcggcttgcgccgctgaccggcagcgacaagccgttgatcgtgctg
accacggtcaacgcaatcgtgcagcgcgtgcccgcgcgcgagctcgtcgcggcgcaggcg
ctgtcggtcgcccccggcaatgtcgtgccgatggacaccatcatcgcctggctcgagcac
aacggctacaaccgctcgtcgaccgtgcgcgagcccggcgaatacgccgtgcgcggcggc
attctggacctgtttccggccggcctcgaccagccggttcgcttcgacttcttcggcgac
agcctggaatcgatccgctccttcgacgccgagacccagcgcacgctgctcgacatgcgc
tcgctcgatctggtgcccgtctccgaattccagctcgtcacggacaccatccgccgcttc
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgatgcgctgtacgaggcc
gtcagcgaaggccgccgccatcccggtatggagcactggctgccgctgttccaggaccgg
atggatacgctgttcgactatctgcaaggcgcagtgatcgcgatcgagccgcaggccgag
gacgccgtccgcgagcgcttcaagcagatcctcgactattaccaggcccgccgcgaggcc
atggagcatccgggcggcggcgccatctacaagccactgccgccggaccggctgtatttc
accgaagaggagtggaccaggcgcctcggcgacgtcccgctggtgcgcctgacgcaattc
tccgtgccggcggatggcactggtgtcgttgatgccggcgcgcgcaagggccgcgacttc
gcgccggagcgcaacgacaccaccgtcaacgtgttcgaatccgtggtcagccacgtgatg
gccttgcaggcgcagcgcaagaaggtcgtgatcacgctgtggagcgaaggctcgcgcgac
cgcatgacctcgatgctgcgcgaccacaagctggcccacaccaccagcgtcaacagctgg
cgcacggtgcaggcgaccccgcgcaacgagactatgctcgccgtgctcggcctcgacagc
ggcttcgagaccgacgagattgcgctcatcagcgagcaggacattctcggcgaccgcctg
gtgcggccgcgcagggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctt
gccgcgggcgacattgtcgtccacgttgatcacggcatcggccggttcgtcggcctgcaa
acgctagacgtcgccggcgcgccgcatgattgtctcgagctgcactatgccgccgaaacg
aaactgttcctccccgtcgagaacatcgagctgctgtcgcgctacggctcagaccagacc
acggtcgagctcgatcgtcttggcggcagcggctggcagacccgcaaggcgaaactcaag
aaccgcatccgcgagatcgcggacgagctaatcaagatcgccgccgcgcgccatctgcac
gaggcgccgaagctgccggtgcagccgggcctctatgacgagttctgtgcacgcttcccc
tatgacgaaaccgaggaccagctaggggcgatcgaatcgaccctgaaggatctcgaactc
ggccgtcccatggaccggttgatctgcggcgacgtcggctttggcaagaccgaggtggcc
ttgcgcgcggcctttgccgtggcgctcgaaggcaagcaggtcgctgtcgtggtgccgacc
acgctgctggcgcgccagcacgcaagaaccttcaccgagcgtttcaagggctttccggtg
aacgtggcgcaggcctcgcgcctgatcccaaccaaggagctgaaccaggtcaagaagggc
attgcggacggctccgtcgacatcgtcgtcggcacccacgcgctgctcggcaaggcgatc
aagttccgcgatctcggcctcgtcatcgtcgacgaggagcagcattttggcgtcactcac
aaggaacggctgaaggcgcttcgctccgaggtgcacgtgctgacgctgtcggcaacgccg
atcccgcgcacgctccagctcgccctcaccggcgtccgcgagctctcgatcattgcctcg
cctccggtggaccgccttgcggtgcgcaccttcgtcgccccgcacgatcccttgatgatc
cgcgaggcgctcttgcgcgagcgctatcgcggcggccaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcgcacgggcagatgccgcccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacattctgctgtcgaccacgatcgtcgaatccggcctcgacattccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggccttgcccagctttatcag
ctccgcggccgcgtcggccgctcgaagctccgggcgtacgcgctgttcacgctgccggcg
cagcagaagatcacgacgcaggccgaacgccggctcatcgtgctgcaatcgctggagacg
ctgggcgcgggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctc
ctcggcgaggagcagtccggccacatcaaggaggtcggcttcgagctctaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtctccgagcccgccgccgaccgctgg
tcgccgtcgatcacgatcggcatgcccgtgctcatcccggaggattacgtcagcgatctc
tcggtccgtctgtcgctctaccggcgcctggccgatctcgacaccgaggaggagatcgag
aattttggcgccgagatgcgcgaccgctttggcgtgttgcccgacgaggtgcgctatctc
ttcaaggtcgccgcgatcaaggcgttctgccgcagggccaatgtcgagaagatcgacgcc
ggcccgaagggcgccgtcatcgccttccgcgacaattcgttcgcctatcccgatcgcctg
gtgacgttcatccgcagccacggccaggctgcgaaggtgcggcccgacatgaaggtggtg
ttcctgcaagactgggaaacgccggaagatcggctcgccggcaccaccgagatcatgcgg
cagctcgcacaactcgcgcaggccaagaaggcggcctag
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